Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0525 ATGTTTACATGCATGACAGCATGTACGAAGCAAACACAGGAGGATGGTGGCGGTGGAGACGACGGACATGGAGGAGCGCGTGGCGGTGGTAGCGGCACACCAAGTACGAAAGAAGCTGTCAAAAGCCTGACGGCGCAGATAAAGGACATGGCTTTGAAAGTTTCGGGTACCTATCGACAATGCAAACCTTGTACGGGGTCCACAAGCTACAAGAAAGGACATAGGCCCTACCCCGATTTTGATACAGCTTCTGAGGGGGTCCCATATCCCTTCATAGGAGGTGCAAGCTCAAGTTCTACACCTGCATGGGATTTTCCAAGTGCTAATCATCACCCAAATACAAGGTCGGAATCTAGATTTGCCGGAGACCGCACCCCCGGAGGAGGATTTGAGTCTTTCGATGTAGTGCTTGATGATGAACCTAAAGAATGGATGGCTCAGGTTGAGCCTGGAGTTCATATCACTTTTGTTTCTCTTCCAAATGGTGGAAACGACCTTAAACGAATTCGGTTTAGCCGAGAAATGTTTAATAAATGGCAAGCTCAAAGATGGTGGGGTGAGAACTATGACCGGATTATGGAGCTTTATAATGTTCAGAGATTCAATCGACAAGCCCTTCACACTCCACCAAGGTCCGAAGATGGGAGAGACTCTTCCTACTCGAGGATGGGGTCAGCAAGGGAGAGTCCCATGGGTTCTTCCTTACACAGGGATTGGACTCCAAGGAGCCACTACAAACCATCATTTTCGGGGAATAACAAAGGCTATTTCCCTTCTGACTCTATGGACCAAGGTGGAACACACCATTATAATGCTGCCGGCTCAAGTGCTTATGCTGGTGGGCCCAGGGGGATCGAAACACTGTCTCTCGAGGCTTCCCGGACAACAACCTCATCTCGAGAAGAGGCTTCGGTCTCTGTCAGCAATGCAAGTGATCTTGATTCAGAGTGGGTCGAGGAAGACGAGCCCGGAGTTTATATTACTATTAGACAGCTGTCTGACGGCAGCAGAGAGCTCCGTCGTGTCAGATTTAGCCGTGAAAGATTTGGTGAAGTACATGCAAAGATGTGGTGGGAAGACAACAGAGAGAGAATACAAGCACAATACCTTTAA 1113 48.7 MFTCMTACTKQTQEDGGGGDDGHGGARGGGSGTPSTKEAVKSLTAQIKDMALKVSGTYRQCKPCTGSTSYKKGHRPYPDFDTASEGVPYPFIGGASSSSTPAWDFPSANHHPNTRSESRFAGDRTPGGGFESFDVVLDDEPKEWMAQVEPGVHITFVSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQRFNRQALHTPPRSEDGRDSSYSRMGSARESPMGSSLHRDWTPRSHYKPSFSGNNKGYFPSDSMDQGGTHHYNAAGSSAYAGGPRGIETLSLEASRTTTSSREEASVSVSNASDLDSEWVEEDEPGVYITIRQLSDGSRELRRVRFSRERFGEVHAKMWWEDNRERIQAQYL 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3789135 3792656 + Conep08aG0054600.1 Cone8ag0525 443074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0525 370 ProSiteProfiles BRX domain profile. 142 197 IPR013591 -
Cone8ag0525 370 ProSiteProfiles BRX domain profile. 315 370 IPR013591 -
Cone8ag0525 370 MobiDBLite consensus disorder prediction 11 41 - -
Cone8ag0525 370 MobiDBLite consensus disorder prediction 100 127 - -
Cone8ag0525 370 MobiDBLite consensus disorder prediction 292 311 - -
Cone8ag0525 370 Pfam Transcription factor regulating root and shoot growth via Pin3 142 196 IPR013591 -
Cone8ag0525 370 Pfam Transcription factor regulating root and shoot growth via Pin3 315 369 IPR013591 -
Cone8ag0525 370 Pfam Transcription factor BRX N-terminal domain 32 64 IPR027988 -
Cone8ag0525 370 MobiDBLite consensus disorder prediction 100 115 - -
Cone8ag0525 370 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 370 IPR044532 -
Cone8ag0525 370 MobiDBLite consensus disorder prediction 207 221 - -
Cone8ag0525 370 MobiDBLite consensus disorder prediction 206 244 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0810 Cone-Chr4:5144668 Cone8ag0525 Cone-Chr8:3789135 8.55E-92 dispersed
Cone6ag0597 Cone-Chr6:2921994 Cone8ag0525 Cone-Chr8:3789135 5.47E-16 dispersed
Cone7ag0762 Cone-Chr7:4727059 Cone8ag0525 Cone-Chr8:3789135 2.29E-92 dispersed
Cone7ag1238 Cone-Chr7:9188765 Cone8ag0525 Cone-Chr8:3789135 2.51E-87 dispersed
Cone8ag0525 Cone-Chr8:3789135 Cone9ag0600 Cone-Chr9:2830304 5.00E-15 dispersed
Cone12ag0525 Cone-Chr12:3632272 Cone8ag0525 Cone-Chr8:3789135 1.76E-255 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0525 - - - 0.0