Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0527 ATGAAGCATAAAGATCATAAACCAGGATCTCATCCAGAGAAAAGTTCAAAGATTGTCTCCATAAGCATTCTATTCGTTTTGCTATGTGGATTTTCATTCTACCTCGGTGGAATCTTCTGTTCTGAAGGGGACAGATTCTATGTGAAAAACGATAAGGATGTCAAGGTCAAAAACTCGGTCAAATCTCCTAAGGGGTCCTCTGTTACTCCTTTGCAGATTGAAGCCATTACCTTCCCTGAATGTAGCAACGACTATCAAGACTATACCCCTTGCACAGATCCAAAGAGGTGGAAGGCATATGGTCTTCATAGGCTTACTTTCATGGAACGCCATTGCCCTCCAGTTTTGGAGAGGAAGGAATGCTTAGTTCCACCCCCAGATGGGTATAAAGTACCCATTAAGTGGCCTAAGAGTAGGGATGAATGTTGGTACAGGAATGTGCCATATGACTGGATTAACAAGCAGAAATCTAATCAAAATTGGCTGAGGAAAGAAGGAGAGAAGTTCCTCTTTCCTGGTGGTGGTACTATGTTTCCCAGAGGTGTTGGCGACTATGTTGACTTAATGCAAGATCTTATACCAGAAATGAAAGATGGTACTGTTAGGACCGCCATTGATACTGGCTGTGGGGTTGCAAGTTGGGGAGGTGATCTGCTGGATCGAGGAATTTTAACTCTTTCTCTTGCCCCAAGAGATAACCATGAAGCTCAAGTCCAGTTTGCATTGGAACGTGGCATTCCGGCAATCCTTGGCATCATTTCAACACAAAGGCTTCCTTTTCCATCGAGCTCCTTTGACATGGCTCACTGCTCAAGATGCCTTATTCCTTGGACTGAGTTTGGAGGAATATACCTACTAGAAATCAACCGGATACTCCGTCCGGGAGGCTTCTGGGTCCTCTCAGGCCCACCTGTGAACTACGAGAACCGCTGGCGTGGATGGAACACAACCGTCGAAGAACAAAAATCGGACTACGAAAAGCTACAAGATCTCCTAACCTCAATGTGCTTCAAACTATACAACAAAAAGGATGATATTGCTGTCTGGCAAAAGACTTCCGATAACACTTGCTACCAAAAGCTCTTCACCCCAGATGCCTACCCACCCAAATGCGATGATAGCATAGAACCCGATTCAGCTTGGTACACTCCCCTTAGAGCTTGTGTGGTTGCTCCAAGCCCCAAGCTCAAGAAAACAGCGTTAATGGCTGTGCCCAAATGGCCCAACCGGTTACATGTTACACCCGAGAGAATCTCGGATGTTCATGGTGGGAGTGCTAGTTCTTTCAATCATGATGATAGTAAGTGGAAGAGCAGGGTGAAGCACTACAAGAAGTTGCTCCCAGCCATTGGGACTGATAAGATTAGGAATGTTATGGATATGAATACGGTTTTTGGAGGTTTTGCTGCTGCTTTGATCAATGATCCTTTGTGGGTCATGAATGTTGTTTCGTCTTATGCTGCTAACACACTTGCCGTGGTCTATGATCGGGGTCTTATTGGAACTTATCATGACTGGTGCGAAGCTTTTTCAACCTATCCTCGAACTTATGATCTTCTCCATCTTGATGGACTTTTCACTGCAGAAGGCCAAAGATGTGATATGAAGTATGTGCTCTTGGAGATGGACCGACTCCTCCGCGCTAATGGGTATGCAATTATCCGAGAATCCAGCTACTTTGTGGATGCCTTGGCTACCATTGCAAACGGCATGAAATGGACTTGTCGTAAAGAAGACACTGAATATAAGCTCGAAAAGGAGAAGGTATTAATTTGCCAGAAAAAGCTCTGGTATTCTTCTAACCGGAGTTCAAGATGA 1818 44.72 MKHKDHKPGSHPEKSSKIVSISILFVLLCGFSFYLGGIFCSEGDRFYVKNDKDVKVKNSVKSPKGSSVTPLQIEAITFPECSNDYQDYTPCTDPKRWKAYGLHRLTFMERHCPPVLERKECLVPPPDGYKVPIKWPKSRDECWYRNVPYDWINKQKSNQNWLRKEGEKFLFPGGGTMFPRGVGDYVDLMQDLIPEMKDGTVRTAIDTGCGVASWGGDLLDRGILTLSLAPRDNHEAQVQFALERGIPAILGIISTQRLPFPSSSFDMAHCSRCLIPWTEFGGIYLLEINRILRPGGFWVLSGPPVNYENRWRGWNTTVEEQKSDYEKLQDLLTSMCFKLYNKKDDIAVWQKTSDNTCYQKLFTPDAYPPKCDDSIEPDSAWYTPLRACVVAPSPKLKKTALMAVPKWPNRLHVTPERISDVHGGSASSFNHDDSKWKSRVKHYKKLLPAIGTDKIRNVMDMNTVFGGFAAALINDPLWVMNVVSSYAANTLAVVYDRGLIGTYHDWCEAFSTYPRTYDLLHLDGLFTAEGQRCDMKYVLLEMDRLLRANGYAIIRESSYFVDALATIANGMKWTCRKEDTEYKLEKEKVLICQKKLWYSSNRSSR 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3827092 3832645 - Conep08aG0054800.1 Cone8ag0527 443076

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0527 605 FunFam probable methyltransferase PMT21 176 354 - -
Cone8ag0527 605 Gene3D Vaccinia Virus protein VP39 177 358 IPR029063 -
Cone8ag0527 605 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 18 597 IPR004159 GO:0005737(PANTHER)|GO:0005768(PANTHER)|GO:0005802(PANTHER)|GO:0008168(InterPro)
Cone8ag0527 605 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 121 316 IPR029063 -
Cone8ag0527 605 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 437 560 IPR029063 -
Cone8ag0527 605 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 87 594 IPR004159 GO:0008168(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0527 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag0327 Cone-Chr7:1432532 Cone8ag0527 Cone-Chr8:3827092 2.55E-153 dispersed
Cone7ag1597 Cone-Chr7:10917372 Cone8ag0527 Cone-Chr8:3827092 8.82E-89 dispersed
Cone8ag0527 Cone-Chr8:3827092 Cone8ag0573 Cone-Chr8:4569164 3.15E-188 dispersed
Cone12ag0529 Cone-Chr12:3678684 Cone8ag0527 Cone-Chr8:3827092 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g882 . . . . . Bpe07g00056 Bma07g00965 Bma14g00112 . . . . . . . . Cpe02g00603 . . . . . . . . . . . . . . Cone8ag0527 Cone12ag0529 . . . . . . Blo03g00841 . Bda07g00138 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003245 2 3 2 3 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 6 4 1 50