Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0528 ATGACAGAGGCGGGGGTGAAACTTACCGATCGGGCGGTAATGGTGATATGCAAGGGCGATTCTACGACGGAGAAGTACCAGCCGGTGGTACAAGTAGTGGACCTCAAGCCGGTGAACACTCAGATGCATCACGGTAACACCGAGAGGTTCAGGCTGTTACTTTCCGATGGGTGTCATTACCAGCAAGGAATGCTCGGCACACAGTTGAATGGATTGGTGAAGAGCGGGAAGTTGCAGAAAGGCTCCGTTGTTCAGTTGAGGGAATACGTTTGTAATCTCATTAAGGGTCGACTGATAATAATTGTAATTGATATGGATCTGATTCTGGAAATATGTGATATCATTGGCGAACCTGTAGCAGCACCAGGATCGATAAGCGGAAGTGGGAGTGGTAATCCCCAATCCATTGGTGGTGTTCCATCAGCCATGGGGCCGATTAGTAAACCAACTATTTCTGGAGCCGCTCCTGAACAATCTAGAATGAACCAACTTGGTAGTTCATTGAATAATTCTGATTCTGGAAGATTTGGTTTGTCAAATGCTCCTCCTCTCTACTCTAAAACAGAGAATGCAACTCGGTTTCATGGCTCAACACCTTTAAGTGTGTCACCTAATGGTCAGAATTTGAGTATTAATAACCCAAGAATGGATGTTCCACGATCACTGCTGAATGGTTTTTCCCATCAATCTCCTCAGCCATTTAATCAGCCACCTCCAATGTATGTCAATAAGGGACCAGTAGCAAGAAATGAAGCTCCCCCAAGGATAGTACCAATTTCTGCTCTTAATCCCTACCAGGGCAGATGGACAATCAAGGCTCGAGTAACTGCAAAATCAGAACTCAGACGCTATAATAATACTCGAGGTGATGGGAAAGTGTTCTCTTTTGACCTTCTTGATTCTGATGGTGGAGAAATTCGAGTAACCTGCTTCAATGCTGCGGCTGATCAGTTTTATGACCAGATTGAAATGGGTAAGGTATATTTGATATCCAAGGGTAGCTTGAAACCTGCTCGAAAGGATTTTAATAATCTCTCTAATGATCTGGAAATTTATTTGGAGAACACATCAACAGTACAACCATGTGTTGAGGATGACAAGTCCATTCCCCAACAGCAGTTTCATTTCCGTTCCATAAGTGATGTTGAGAGCATGGATAACAACAGTGTTGTGGATGTAATTGGTGTCGTCTCATTTATCAGTGCTTCAACTTCTATAATGAGGAAAAATGGCACGGAGACTCAGAAGAGATCCCTCCAACTAAAAGACATGTCTGGCCGAAGTGTTGAGTTGACTTTATGGGGAAATTTCTGCCATGCAGATGGGCAAAGGCTGCAAAATATGTGTGATTCTGGTGCATTCCCTGTTCTTGCTGTGAAATCCGGCAGAGTCAGCGACTTCAATGGGAAAGCCATGGGCACCATTTCTACAAGTCAGCTTTTCATAGCGCCAGATTTTCCTGAAGCCCACAGGCTAAAGGATTGGTTTGAGAAGGAAGGAAGGAACACCCTGTCTATATCCATTTCCAGGGAAAGCTCTGGTGTTGGTAAGACAGATGTTAGAAAGACAATATCGCAGATTAAGGATGAGAAGCTGGGGACTTCTGAAAAGCCGGATTGGATAACAGTAAATGCAACTGTTTCATTTATTAAGGTGGACAATTTCTGCTACACAGCATGTCCCCTCATGATAGGAGACCGCCAATGCAACAAAAAAGTTGCAAACAATGGAGATGGAAAATGGAGGTGCGATAGATGCGATCAATCCATTGATGAGTGTGACTACAGGTATTTACTCCAGCTCCAAATACAGGACCATTCTGGTTTGACTTGGGTTACTGCATTTCAGGAAAGTGGTGAAGAAATCATGGGTGTACCGGCAAAGAGTTTATATTATCTTAAATATGAAGAGCAAGATGATGAGAAATTTGCAGAGATCATCCGTAAGGTTCTATTCACTAAATACAACTTTAAACTGAAAGTGAAGGAAGAGACATACAGCGATGAGCAGAGGATAAAGTCCACAGTTGTCAAAGCAGAAAGGGTAAATTTTTCACCAGAATCCAGATATCTATTAGAATTGATGGATAAGCTCAAAGTGGAGAACTCTGGCTCATTCCCCTCAAGAGTAGAAATTACCCAAAATGACCCTGGAATGTACCAAACTGCAGTTGGAAACTTCTCTAATAGACCCTCTATAACAGTTGGAAGTATTGGAACTAGACTGCCTACAATGGCCGGGAACTTTTCTGGGAATAGCAACAGCAACCCTGGAAGAGAATACGGCTTATCTAATCAAATGGATCAGTATGGAAACCAGTATAATAGTTCTATTGGTCCTTCAACTTGTCCTATTAATTCCTACATGTACTGTAACAGCTGTGGGGGCAGTGGTCATAGCCCGATCAACTGCCCAAGTATAATGAATAGTCCTGTACAGCAGTCCGTGGGAGGGAATTATTCGAATAAATTTTCTGGTCCTTCTCCAAGTGGTGGGTCCAGCGAATGCTATAAATGCAATCAACCTGGACATTGGGCTAGAGATTGTCGGGGTTTAGGAGGCACTGTTCCTCCAGCTTATGGTGGTGGTAGTGGTGGATATGCTGCTAGGAGATAA 2616 43.27 MTEAGVKLTDRAVMVICKGDSTTEKYQPVVQVVDLKPVNTQMHHGNTERFRLLLSDGCHYQQGMLGTQLNGLVKSGKLQKGSVVQLREYVCNLIKGRLIIIVIDMDLILEICDIIGEPVAAPGSISGSGSGNPQSIGGVPSAMGPISKPTISGAAPEQSRMNQLGSSLNNSDSGRFGLSNAPPLYSKTENATRFHGSTPLSVSPNGQNLSINNPRMDVPRSLLNGFSHQSPQPFNQPPPMYVNKGPVARNEAPPRIVPISALNPYQGRWTIKARVTAKSELRRYNNTRGDGKVFSFDLLDSDGGEIRVTCFNAAADQFYDQIEMGKVYLISKGSLKPARKDFNNLSNDLEIYLENTSTVQPCVEDDKSIPQQQFHFRSISDVESMDNNSVVDVIGVVSFISASTSIMRKNGTETQKRSLQLKDMSGRSVELTLWGNFCHADGQRLQNMCDSGAFPVLAVKSGRVSDFNGKAMGTISTSQLFIAPDFPEAHRLKDWFEKEGRNTLSISISRESSGVGKTDVRKTISQIKDEKLGTSEKPDWITVNATVSFIKVDNFCYTACPLMIGDRQCNKKVANNGDGKWRCDRCDQSIDECDYRYLLQLQIQDHSGLTWVTAFQESGEEIMGVPAKSLYYLKYEEQDDEKFAEIIRKVLFTKYNFKLKVKEETYSDEQRIKSTVVKAERVNFSPESRYLLELMDKLKVENSGSFPSRVEITQNDPGMYQTAVGNFSNRPSITVGSIGTRLPTMAGNFSGNSNSNPGREYGLSNQMDQYGNQYNSSIGPSTCPINSYMYCNSCGGSGHSPINCPSIMNSPVQQSVGGNYSNKFSGPSPSGGSSECYKCNQPGHWARDCRGLGGTVPPAYGGGSGGYAARR 871
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3851334 3854313 - Conep08aG0054900.1 Cone8ag0528 443077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0528 871 CDD RPA1_DBD_B 390 497 - -
Cone8ag0528 871 FunFam Replication protein A subunit 7 122 - -
Cone8ag0528 871 Pfam Replication factor-A protein 1, N-terminal domain 8 108 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Cone8ag0528 871 Pfam Replication factor-A C terminal domain 540 691 IPR013955 -
Cone8ag0528 871 Pfam Zinc knuckle 835 850 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone8ag0528 871 Gene3D - 506 698 IPR012340 -
Cone8ag0528 871 CDD RPA1N 12 108 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Cone8ag0528 871 MobiDBLite consensus disorder prediction 124 154 - -
Cone8ag0528 871 SUPERFAMILY Nucleic acid-binding proteins 6 116 IPR012340 -
Cone8ag0528 871 SMART c2hcfinal6 835 851 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone8ag0528 871 SMART c2hcfinal6 790 806 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone8ag0528 871 FunFam Replication protein A subunit 507 698 - -
Cone8ag0528 871 ProSiteProfiles Zinc finger CCHC-type profile. 836 850 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone8ag0528 871 FunFam Replication protein A subunit 255 365 - -
Cone8ag0528 871 PANTHER REPLICATION FACTOR A 1, RFA1 257 690 IPR004591 GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER)
Cone8ag0528 871 FunFam Replication protein A subunit 368 506 - -
Cone8ag0528 871 Pfam OB-fold nucleic acid binding domain 269 353 IPR004365 GO:0003676(InterPro)
Cone8ag0528 871 SUPERFAMILY Nucleic acid-binding proteins 374 502 IPR012340 -
Cone8ag0528 871 SUPERFAMILY Retrovirus zinc finger-like domains 816 854 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone8ag0528 871 SUPERFAMILY Nucleic acid-binding proteins 521 698 IPR012340 -
Cone8ag0528 871 SUPERFAMILY Nucleic acid-binding proteins 255 368 IPR012340 -
Cone8ag0528 871 CDD RPA1_DBD_A 258 361 - -
Cone8ag0528 871 Gene3D - 6 121 IPR012340 -
Cone8ag0528 871 Pfam Replication protein A OB domain 379 482 IPR031657 -
Cone8ag0528 871 CDD RPA1_DBD_C 524 697 IPR047192 -
Cone8ag0528 871 Gene3D - 368 505 IPR012340 -
Cone8ag0528 871 NCBIfam replication factor-a protein 1 (rpa1) 231 697 IPR004591 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cone8ag0528 871 Gene3D - 255 364 IPR012340 -
Cone8ag0528 871 Gene3D - 788 855 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag0036 Cone-Chr7:163234 Cone8ag0528 Cone-Chr8:3851334 9.21E-252 dispersed
Cone12ag0531 Cone-Chr12:3699430 Cone8ag0528 Cone-Chr8:3851334 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0528 K07466 - csv:101211358 1138.25