Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0528 ATGACAGAGGCGGGGGTGAAACTTACCGATCGGGCGGTAATGGTGATATGCAAGGGCGATTCTACGACGGAGAAGTACCAGCCGGTGGTACAAGTAGTGGACCTCAAGCCGGTGAACACTCAGATGCATCACGGTAACACCGAGAGGTTCAGGCTGTTACTTTCCGATGGGTGTCATTACCAGCAAGGAATGCTCGGCACACAGTTGAATGGATTGGTGAAGAGCGGGAAGTTGCAGAAAGGCTCCGTTGTTCAGTTGAGGGAATACGTTTGTAATCTCATTAAGGGTCGACTGATAATAATTGTAATTGATATGGATCTGATTCTGGAAATATGTGATATCATTGGCGAACCTGTAGCAGCACCAGGATCGATAAGCGGAAGTGGGAGTGGTAATCCCCAATCCATTGGTGGTGTTCCATCAGCCATGGGGCCGATTAGTAAACCAACTATTTCTGGAGCCGCTCCTGAACAATCTAGAATGAACCAACTTGGTAGTTCATTGAATAATTCTGATTCTGGAAGATTTGGTTTGTCAAATGCTCCTCCTCTCTACTCTAAAACAGAGAATGCAACTCGGTTTCATGGCTCAACACCTTTAAGTGTGTCACCTAATGGTCAGAATTTGAGTATTAATAACCCAAGAATGGATGTTCCACGATCACTGCTGAATGGTTTTTCCCATCAATCTCCTCAGCCATTTAATCAGCCACCTCCAATGTATGTCAATAAGGGACCAGTAGCAAGAAATGAAGCTCCCCCAAGGATAGTACCAATTTCTGCTCTTAATCCCTACCAGGGCAGATGGACAATCAAGGCTCGAGTAACTGCAAAATCAGAACTCAGACGCTATAATAATACTCGAGGTGATGGGAAAGTGTTCTCTTTTGACCTTCTTGATTCTGATGGTGGAGAAATTCGAGTAACCTGCTTCAATGCTGCGGCTGATCAGTTTTATGACCAGATTGAAATGGGTAAGGTATATTTGATATCCAAGGGTAGCTTGAAACCTGCTCGAAAGGATTTTAATAATCTCTCTAATGATCTGGAAATTTATTTGGAGAACACATCAACAGTACAACCATGTGTTGAGGATGACAAGTCCATTCCCCAACAGCAGTTTCATTTCCGTTCCATAAGTGATGTTGAGAGCATGGATAACAACAGTGTTGTGGATGTAATTGGTGTCGTCTCATTTATCAGTGCTTCAACTTCTATAATGAGGAAAAATGGCACGGAGACTCAGAAGAGATCCCTCCAACTAAAAGACATGTCTGGCCGAAGTGTTGAGTTGACTTTATGGGGAAATTTCTGCCATGCAGATGGGCAAAGGCTGCAAAATATGTGTGATTCTGGTGCATTCCCTGTTCTTGCTGTGAAATCCGGCAGAGTCAGCGACTTCAATGGGAAAGCCATGGGCACCATTTCTACAAGTCAGCTTTTCATAGCGCCAGATTTTCCTGAAGCCCACAGGCTAAAGGATTGGTTTGAGAAGGAAGGAAGGAACACCCTGTCTATATCCATTTCCAGGGAAAGCTCTGGTGTTGGTAAGACAGATGTTAGAAAGACAATATCGCAGATTAAGGATGAGAAGCTGGGGACTTCTGAAAAGCCGGATTGGATAACAGTAAATGCAACTGTTTCATTTATTAAGGTGGACAATTTCTGCTACACAGCATGTCCCCTCATGATAGGAGACCGCCAATGCAACAAAAAAGTTGCAAACAATGGAGATGGAAAATGGAGGTGCGATAGATGCGATCAATCCATTGATGAGTGTGACTACAGGTATTTACTCCAGCTCCAAATACAGGACCATTCTGGTTTGACTTGGGTTACTGCATTTCAGGAAAGTGGTGAAGAAATCATGGGTGTACCGGCAAAGAGTTTATATTATCTTAAATATGAAGAGCAAGATGATGAGAAATTTGCAGAGATCATCCGTAAGGTTCTATTCACTAAATACAACTTTAAACTGAAAGTGAAGGAAGAGACATACAGCGATGAGCAGAGGATAAAGTCCACAGTTGTCAAAGCAGAAAGGGTAAATTTTTCACCAGAATCCAGATATCTATTAGAATTGATGGATAAGCTCAAAGTGGAGAACTCTGGCTCATTCCCCTCAAGAGTAGAAATTACCCAAAATGACCCTGGAATGTACCAAACTGCAGTTGGAAACTTCTCTAATAGACCCTCTATAACAGTTGGAAGTATTGGAACTAGACTGCCTACAATGGCCGGGAACTTTTCTGGGAATAGCAACAGCAACCCTGGAAGAGAATACGGCTTATCTAATCAAATGGATCAGTATGGAAACCAGTATAATAGTTCTATTGGTCCTTCAACTTGTCCTATTAATTCCTACATGTACTGTAACAGCTGTGGGGGCAGTGGTCATAGCCCGATCAACTGCCCAAGTATAATGAATAGTCCTGTACAGCAGTCCGTGGGAGGGAATTATTCGAATAAATTTTCTGGTCCTTCTCCAAGTGGTGGGTCCAGCGAATGCTATAAATGCAATCAACCTGGACATTGGGCTAGAGATTGTCGGGGTTTAGGAGGCACTGTTCCTCCAGCTTATGGTGGTGGTAGTGGTGGATATGCTGCTAGGAGATAA 2616 43.27 MTEAGVKLTDRAVMVICKGDSTTEKYQPVVQVVDLKPVNTQMHHGNTERFRLLLSDGCHYQQGMLGTQLNGLVKSGKLQKGSVVQLREYVCNLIKGRLIIIVIDMDLILEICDIIGEPVAAPGSISGSGSGNPQSIGGVPSAMGPISKPTISGAAPEQSRMNQLGSSLNNSDSGRFGLSNAPPLYSKTENATRFHGSTPLSVSPNGQNLSINNPRMDVPRSLLNGFSHQSPQPFNQPPPMYVNKGPVARNEAPPRIVPISALNPYQGRWTIKARVTAKSELRRYNNTRGDGKVFSFDLLDSDGGEIRVTCFNAAADQFYDQIEMGKVYLISKGSLKPARKDFNNLSNDLEIYLENTSTVQPCVEDDKSIPQQQFHFRSISDVESMDNNSVVDVIGVVSFISASTSIMRKNGTETQKRSLQLKDMSGRSVELTLWGNFCHADGQRLQNMCDSGAFPVLAVKSGRVSDFNGKAMGTISTSQLFIAPDFPEAHRLKDWFEKEGRNTLSISISRESSGVGKTDVRKTISQIKDEKLGTSEKPDWITVNATVSFIKVDNFCYTACPLMIGDRQCNKKVANNGDGKWRCDRCDQSIDECDYRYLLQLQIQDHSGLTWVTAFQESGEEIMGVPAKSLYYLKYEEQDDEKFAEIIRKVLFTKYNFKLKVKEETYSDEQRIKSTVVKAERVNFSPESRYLLELMDKLKVENSGSFPSRVEITQNDPGMYQTAVGNFSNRPSITVGSIGTRLPTMAGNFSGNSNSNPGREYGLSNQMDQYGNQYNSSIGPSTCPINSYMYCNSCGGSGHSPINCPSIMNSPVQQSVGGNYSNKFSGPSPSGGSSECYKCNQPGHWARDCRGLGGTVPPAYGGGSGGYAARR 871
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3851334 3854313 - Conep08aG0054900.1 Cone8ag0528 443077

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0528 871 CDD RPA1_DBD_B 390 497 - -
Cone8ag0528 871 FunFam Replication protein A subunit 7 122 - -
Cone8ag0528 871 Pfam Replication factor-A protein 1, N-terminal domain 8 108 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Cone8ag0528 871 Pfam Replication factor-A C terminal domain 540 691 IPR013955 -
Cone8ag0528 871 Pfam Zinc knuckle 835 850 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone8ag0528 871 Gene3D - 506 698 IPR012340 -
Cone8ag0528 871 CDD RPA1N 12 108 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Cone8ag0528 871 MobiDBLite consensus disorder prediction 124 154 - -
Cone8ag0528 871 SUPERFAMILY Nucleic acid-binding proteins 6 116 IPR012340 -
Cone8ag0528 871 SMART c2hcfinal6 835 851 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone8ag0528 871 SMART c2hcfinal6 790 806 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone8ag0528 871 FunFam Replication protein A subunit 507 698 - -
Cone8ag0528 871 ProSiteProfiles Zinc finger CCHC-type profile. 836 850 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone8ag0528 871 FunFam Replication protein A subunit 255 365 - -
Cone8ag0528 871 PANTHER REPLICATION FACTOR A 1, RFA1 257 690 IPR004591 GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER)
Cone8ag0528 871 FunFam Replication protein A subunit 368 506 - -
Cone8ag0528 871 Pfam OB-fold nucleic acid binding domain 269 353 IPR004365 GO:0003676(InterPro)
Cone8ag0528 871 SUPERFAMILY Nucleic acid-binding proteins 374 502 IPR012340 -
Cone8ag0528 871 SUPERFAMILY Retrovirus zinc finger-like domains 816 854 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone8ag0528 871 SUPERFAMILY Nucleic acid-binding proteins 521 698 IPR012340 -
Cone8ag0528 871 SUPERFAMILY Nucleic acid-binding proteins 255 368 IPR012340 -
Cone8ag0528 871 CDD RPA1_DBD_A 258 361 - -
Cone8ag0528 871 Gene3D - 6 121 IPR012340 -
Cone8ag0528 871 Pfam Replication protein A OB domain 379 482 IPR031657 -
Cone8ag0528 871 CDD RPA1_DBD_C 524 697 IPR047192 -
Cone8ag0528 871 Gene3D - 368 505 IPR012340 -
Cone8ag0528 871 NCBIfam replication factor-a protein 1 (rpa1) 231 697 IPR004591 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cone8ag0528 871 Gene3D - 255 364 IPR012340 -
Cone8ag0528 871 Gene3D - 788 855 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0528 K07466 - - csv:101211358 1138.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag0036 Cone-Chr7:163234 Cone8ag0528 Cone-Chr8:3851334 9.21E-252 dispersed
Cone12ag0531 Cone-Chr12:3699430 Cone8ag0528 Cone-Chr8:3851334 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone11ag1488 . 2 874 Core DNA Replication Machinery Family AT4G14700 59.5 3.9e-283 971.5
Cone11ag1488 . 1 874 Core DNA Replication Machinery Family AT4G12620 60.9 1.2e-292 1003.0
Cone19ag0109 . 2 357 Core DNA Replication Machinery Family AT2G37560 66.3 3.0e-136 482.3
Cone13ag0792 . 5 417 Core DNA Replication Machinery Family AT2G01120 63.3 9.1e-151 530.8
Cone14ag0366 . 1 535 Core DNA Replication Machinery Family AT4G29910 56.1 8.7e-165 577.8
Cone19ag0949 . 1 275 Core DNA Replication Machinery Family AT1G26840 64.7 6.9e-94 341.3
Cone14ag0637 . 1 946 Core DNA Replication Machinery Family AT1G44900 76.0 0.0e+00 1381.3
Cone9ag0904 . 1 578 Core DNA Replication Machinery Family AT5G46280 79.8 6.1e-267 917.1
Cone3ag1220 . 1 839 Core DNA Replication Machinery Family AT2G16440 70.4 0.0e+00 1122.8
Cone16ag0446 . 1 728 Core DNA Replication Machinery Family AT2G07690 75.5 1.4e-313 1072.4
Cone2ag0557 . 44 541 Core DNA Replication Machinery Family AT2G07690 63.4 4.1e-191 665.6
Cone5ag1384 . 7 783 Core DNA Replication Machinery Family AT5G44635 69.2 0.0e+00 1119.4
Cone20ag0983 . 5 719 Core DNA Replication Machinery Family AT4G02060 83.2 0.0e+00 1200.7
Cone5ag1091 . 31 492 Core DNA Replication Machinery Family AT2G29680 56.3 1.7e-143 506.9
Cone1ag0580 . 96 449 Core DNA Replication Machinery Family AT2G29680 59.6 1.1e-107 387.9
Cone5ag1091 . 32 453 Core DNA Replication Machinery Family AT1G07270 56.0 2.7e-127 453.0
Cone1ag0580 . 96 427 Core DNA Replication Machinery Family AT1G07270 61.4 3.5e-103 372.9
Cone7ag0082 . 1 593 Core DNA Replication Machinery Family AT3G25100 75.8 3.6e-254 874.8
Cone4ag0091 . 1 593 Core DNA Replication Machinery Family AT3G25100 75.5 1.5e-252 869.4
Cone19ag1277 . 20 800 Core DNA Replication Machinery Family AT3G09660 72.6 0.0e+00 1097.4
Cone8ag1012 . 1276 1913 Core DNA Replication Machinery Family AT2G14050 76.8 3.9e-286 981.1
Cone12ag0982 . 6 505 Core DNA Replication Machinery Family AT2G14050 59.2 1.7e-185 646.7
Cone16ag0785 . 5 334 Core DNA Replication Machinery Family AT2G20980 59.8 4.9e-106 382.1
Cone2ag0356 . 1 199 Core DNA Replication Machinery Family AT1G80190 70.8 3.8e-78 288.5
Cone10ag0951 . 1 145 Core DNA Replication Machinery Family AT3G12530 71.0 4.9e-59 224.6
Cone11ag1192 . 1 182 Core DNA Replication Machinery Family AT1G19080 69.8 1.8e-71 266.2
Cone11ag1192 . 1 182 Core DNA Replication Machinery Family AT3G55490 69.8 1.8e-71 266.2
Cone14ag0711 . 15 164 Core DNA Replication Machinery Family AT5G49010 64.7 4.5e-49 191.8
Cone11ag1102 . 1 1553 Core DNA Replication Machinery Family AT5G67100 60.8 0.0e+00 1779.6
Cone19ag1109 . 140 760 Core DNA Replication Machinery Family AT1G67630 61.1 1.4e-221 766.5
Cone13ag1130 . 4 313 Core DNA Replication Machinery Family AT1G67630 50.2 2.7e-79 293.9
Cone6ag0848 . 1 320 Core DNA Replication Machinery Family AT5G41880 65.0 4.2e-130 462.2
Cone9ag0846 . 1 231 Core DNA Replication Machinery Family AT5G41880 64.9 1.9e-90 330.5
Cone9ag1229 . 3 1010 Core DNA Replication Machinery Family AT5G63960 79.2 0.0e+00 1621.7
Cone13ag0534 . 4 439 Core DNA Replication Machinery Family AT2G42120 78.3 1.1e-207 719.9
Cone19ag0482 . 4 439 Core DNA Replication Machinery Family AT2G42120 76.7 2.1e-203 705.7
Cone1ag0529 . 1 2094 Core DNA Replication Machinery Family AT1G08260 69.8 0.0e+00 2929.0
Cone5ag1351 . 2 187 Core DNA Replication Machinery Family AT1G08260 57.5 4.5e-57 221.9
Cone5ag1350 . 1 151 Core DNA Replication Machinery Family AT1G08260 64.2 1.7e-48 193.4
Cone1ag0529 . 10 2211 Core DNA Replication Machinery Family AT2G27120 66.6 0.0e+00 2889.4
Cone5ag1351 . 2 187 Core DNA Replication Machinery Family AT2G27120 53.2 1.3e-48 193.7
Cone5ag1350 . 9 151 Core DNA Replication Machinery Family AT2G27120 66.4 7.3e-47 188.0
Cone19ag0415 . 7 459 Core DNA Replication Machinery Family AT5G22110 64.9 3.6e-175 612.1
Cone5ag1309 . 1 956 Core DNA Replication Machinery Family AT5G22010 63.0 1.9e-310 1062.4
Cone12ag0326 . 23 342 Core DNA Replication Machinery Family AT1G63160 92.8 6.2e-171 597.4
Cone8ag0325 . 20 205 Core DNA Replication Machinery Family AT1G63160 53.0 5.1e-80 295.4
Cone3ag0535 . 41 394 Core DNA Replication Machinery Family AT5G27740 85.9 5.1e-179 624.4
Cone4ag1422 . 1 334 Core DNA Replication Machinery Family AT1G21690 82.1 1.8e-154 542.7
Cone7ag1515 . 2 137 Core DNA Replication Machinery Family AT1G21690 70.1 2.4e-45 180.3
Cone17ag1292 . 1 364 Core DNA Replication Machinery Family AT1G77470 75.9 4.2e-152 535.0
Cone20ag0436 . 1 297 Core DNA Replication Machinery Family AT1G77470 61.2 6.6e-89 325.1
Cone7ag0036 . 24 617 Core DNA Replication Machinery Family AT2G06510 69.5 5.4e-253 870.9
Cone12ag0531 . 32 688 Core DNA Replication Machinery Family AT2G06510 53.7 3.6e-204 708.8
Cone8ag0528 . 32 695 Core DNA Replication Machinery Family AT2G06510 53.1 9.7e-202 700.7
Cone2ag0799 . 1 628 Core DNA Replication Machinery Family AT5G08020 67.7 9.4e-250 860.1
Cone16ag0210 . 1 628 Core DNA Replication Machinery Family AT5G08020 67.2 5.1e-248 854.4
Cone12ag0531 . 6 811 Core DNA Replication Machinery Family AT5G45400 50.2 1.3e-233 807.0
Cone2ag0799 . 1 622 Core DNA Replication Machinery Family AT5G61000 69.3 2.9e-254 875.2
Cone16ag0210 . 1 622 Core DNA Replication Machinery Family AT5G61000 69.6 3.2e-253 871.7
Cone12ag0531 . 6 798 Core DNA Replication Machinery Family AT4G19130 55.3 3.2e-234 808.9
Cone8ag0528 . 6 820 Core DNA Replication Machinery Family AT4G19130 54.2 6.1e-233 804.7
Cone5ag0109 . 1 361 Core DNA Replication Machinery Family AT5G26680 87.8 1.5e-182 636.3
Cone1ag1587 . 1 361 Core DNA Replication Machinery Family AT5G26680 87.8 3.7e-181 631.7
Cone7ag0441 . 2 1118 Core DNA Replication Machinery Family AT1G08840 52.8 1.4e-306 1049.7
Cone1ag1430 . 1 296 Core DNA Replication Machinery Family AT2G25100 67.8 7.6e-114 407.5
Cone1ag0493 . 170 805 Core DNA Replication Machinery Family AT1G08130 76.3 3.5e-289 991.5
Cone19ag1014 . 25 624 Core DNA Replication Machinery Family AT1G08130 63.9 3.2e-226 782.3
Cone6ag0127 . 127 494 Core DNA Replication Machinery Family AT1G08130 66.8 2.9e-134 476.9
Cone1ag0493 . 206 805 Core DNA Replication Machinery Family AT1G49250 67.8 2.9e-236 815.5
Cone19ag1014 . 65 624 Core DNA Replication Machinery Family AT1G49250 57.8 4.2e-187 652.1
Cone6ag0127 . 165 495 Core DNA Replication Machinery Family AT1G49250 61.1 4.0e-105 379.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008728 0 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35