Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone8ag0528 | ATGACAGAGGCGGGGGTGAAACTTACCGATCGGGCGGTAATGGTGATATGCAAGGGCGATTCTACGACGGAGAAGTACCAGCCGGTGGTACAAGTAGTGGACCTCAAGCCGGTGAACACTCAGATGCATCACGGTAACACCGAGAGGTTCAGGCTGTTACTTTCCGATGGGTGTCATTACCAGCAAGGAATGCTCGGCACACAGTTGAATGGATTGGTGAAGAGCGGGAAGTTGCAGAAAGGCTCCGTTGTTCAGTTGAGGGAATACGTTTGTAATCTCATTAAGGGTCGACTGATAATAATTGTAATTGATATGGATCTGATTCTGGAAATATGTGATATCATTGGCGAACCTGTAGCAGCACCAGGATCGATAAGCGGAAGTGGGAGTGGTAATCCCCAATCCATTGGTGGTGTTCCATCAGCCATGGGGCCGATTAGTAAACCAACTATTTCTGGAGCCGCTCCTGAACAATCTAGAATGAACCAACTTGGTAGTTCATTGAATAATTCTGATTCTGGAAGATTTGGTTTGTCAAATGCTCCTCCTCTCTACTCTAAAACAGAGAATGCAACTCGGTTTCATGGCTCAACACCTTTAAGTGTGTCACCTAATGGTCAGAATTTGAGTATTAATAACCCAAGAATGGATGTTCCACGATCACTGCTGAATGGTTTTTCCCATCAATCTCCTCAGCCATTTAATCAGCCACCTCCAATGTATGTCAATAAGGGACCAGTAGCAAGAAATGAAGCTCCCCCAAGGATAGTACCAATTTCTGCTCTTAATCCCTACCAGGGCAGATGGACAATCAAGGCTCGAGTAACTGCAAAATCAGAACTCAGACGCTATAATAATACTCGAGGTGATGGGAAAGTGTTCTCTTTTGACCTTCTTGATTCTGATGGTGGAGAAATTCGAGTAACCTGCTTCAATGCTGCGGCTGATCAGTTTTATGACCAGATTGAAATGGGTAAGGTATATTTGATATCCAAGGGTAGCTTGAAACCTGCTCGAAAGGATTTTAATAATCTCTCTAATGATCTGGAAATTTATTTGGAGAACACATCAACAGTACAACCATGTGTTGAGGATGACAAGTCCATTCCCCAACAGCAGTTTCATTTCCGTTCCATAAGTGATGTTGAGAGCATGGATAACAACAGTGTTGTGGATGTAATTGGTGTCGTCTCATTTATCAGTGCTTCAACTTCTATAATGAGGAAAAATGGCACGGAGACTCAGAAGAGATCCCTCCAACTAAAAGACATGTCTGGCCGAAGTGTTGAGTTGACTTTATGGGGAAATTTCTGCCATGCAGATGGGCAAAGGCTGCAAAATATGTGTGATTCTGGTGCATTCCCTGTTCTTGCTGTGAAATCCGGCAGAGTCAGCGACTTCAATGGGAAAGCCATGGGCACCATTTCTACAAGTCAGCTTTTCATAGCGCCAGATTTTCCTGAAGCCCACAGGCTAAAGGATTGGTTTGAGAAGGAAGGAAGGAACACCCTGTCTATATCCATTTCCAGGGAAAGCTCTGGTGTTGGTAAGACAGATGTTAGAAAGACAATATCGCAGATTAAGGATGAGAAGCTGGGGACTTCTGAAAAGCCGGATTGGATAACAGTAAATGCAACTGTTTCATTTATTAAGGTGGACAATTTCTGCTACACAGCATGTCCCCTCATGATAGGAGACCGCCAATGCAACAAAAAAGTTGCAAACAATGGAGATGGAAAATGGAGGTGCGATAGATGCGATCAATCCATTGATGAGTGTGACTACAGGTATTTACTCCAGCTCCAAATACAGGACCATTCTGGTTTGACTTGGGTTACTGCATTTCAGGAAAGTGGTGAAGAAATCATGGGTGTACCGGCAAAGAGTTTATATTATCTTAAATATGAAGAGCAAGATGATGAGAAATTTGCAGAGATCATCCGTAAGGTTCTATTCACTAAATACAACTTTAAACTGAAAGTGAAGGAAGAGACATACAGCGATGAGCAGAGGATAAAGTCCACAGTTGTCAAAGCAGAAAGGGTAAATTTTTCACCAGAATCCAGATATCTATTAGAATTGATGGATAAGCTCAAAGTGGAGAACTCTGGCTCATTCCCCTCAAGAGTAGAAATTACCCAAAATGACCCTGGAATGTACCAAACTGCAGTTGGAAACTTCTCTAATAGACCCTCTATAACAGTTGGAAGTATTGGAACTAGACTGCCTACAATGGCCGGGAACTTTTCTGGGAATAGCAACAGCAACCCTGGAAGAGAATACGGCTTATCTAATCAAATGGATCAGTATGGAAACCAGTATAATAGTTCTATTGGTCCTTCAACTTGTCCTATTAATTCCTACATGTACTGTAACAGCTGTGGGGGCAGTGGTCATAGCCCGATCAACTGCCCAAGTATAATGAATAGTCCTGTACAGCAGTCCGTGGGAGGGAATTATTCGAATAAATTTTCTGGTCCTTCTCCAAGTGGTGGGTCCAGCGAATGCTATAAATGCAATCAACCTGGACATTGGGCTAGAGATTGTCGGGGTTTAGGAGGCACTGTTCCTCCAGCTTATGGTGGTGGTAGTGGTGGATATGCTGCTAGGAGATAA | 2616 | 43.27 | MTEAGVKLTDRAVMVICKGDSTTEKYQPVVQVVDLKPVNTQMHHGNTERFRLLLSDGCHYQQGMLGTQLNGLVKSGKLQKGSVVQLREYVCNLIKGRLIIIVIDMDLILEICDIIGEPVAAPGSISGSGSGNPQSIGGVPSAMGPISKPTISGAAPEQSRMNQLGSSLNNSDSGRFGLSNAPPLYSKTENATRFHGSTPLSVSPNGQNLSINNPRMDVPRSLLNGFSHQSPQPFNQPPPMYVNKGPVARNEAPPRIVPISALNPYQGRWTIKARVTAKSELRRYNNTRGDGKVFSFDLLDSDGGEIRVTCFNAAADQFYDQIEMGKVYLISKGSLKPARKDFNNLSNDLEIYLENTSTVQPCVEDDKSIPQQQFHFRSISDVESMDNNSVVDVIGVVSFISASTSIMRKNGTETQKRSLQLKDMSGRSVELTLWGNFCHADGQRLQNMCDSGAFPVLAVKSGRVSDFNGKAMGTISTSQLFIAPDFPEAHRLKDWFEKEGRNTLSISISRESSGVGKTDVRKTISQIKDEKLGTSEKPDWITVNATVSFIKVDNFCYTACPLMIGDRQCNKKVANNGDGKWRCDRCDQSIDECDYRYLLQLQIQDHSGLTWVTAFQESGEEIMGVPAKSLYYLKYEEQDDEKFAEIIRKVLFTKYNFKLKVKEETYSDEQRIKSTVVKAERVNFSPESRYLLELMDKLKVENSGSFPSRVEITQNDPGMYQTAVGNFSNRPSITVGSIGTRLPTMAGNFSGNSNSNPGREYGLSNQMDQYGNQYNSSIGPSTCPINSYMYCNSCGGSGHSPINCPSIMNSPVQQSVGGNYSNKFSGPSPSGGSSECYKCNQPGHWARDCRGLGGTVPPAYGGGSGGYAARR | 871 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 3851334 | 3854313 | - | Conep08aG0054900.1 | Cone8ag0528 | 443077 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone8ag0528 | 871 | CDD | RPA1_DBD_B | 390 | 497 | - | - | |
Cone8ag0528 | 871 | FunFam | Replication protein A subunit | 7 | 122 | - | - | |
Cone8ag0528 | 871 | Pfam | Replication factor-A protein 1, N-terminal domain | 8 | 108 | IPR007199 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro) | |
Cone8ag0528 | 871 | Pfam | Replication factor-A C terminal domain | 540 | 691 | IPR013955 | - | |
Cone8ag0528 | 871 | Pfam | Zinc knuckle | 835 | 850 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
Cone8ag0528 | 871 | Gene3D | - | 506 | 698 | IPR012340 | - | |
Cone8ag0528 | 871 | CDD | RPA1N | 12 | 108 | IPR007199 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro) | |
Cone8ag0528 | 871 | MobiDBLite | consensus disorder prediction | 124 | 154 | - | - | |
Cone8ag0528 | 871 | SUPERFAMILY | Nucleic acid-binding proteins | 6 | 116 | IPR012340 | - | |
Cone8ag0528 | 871 | SMART | c2hcfinal6 | 835 | 851 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
Cone8ag0528 | 871 | SMART | c2hcfinal6 | 790 | 806 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
Cone8ag0528 | 871 | FunFam | Replication protein A subunit | 507 | 698 | - | - | |
Cone8ag0528 | 871 | ProSiteProfiles | Zinc finger CCHC-type profile. | 836 | 850 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
Cone8ag0528 | 871 | FunFam | Replication protein A subunit | 255 | 365 | - | - | |
Cone8ag0528 | 871 | PANTHER | REPLICATION FACTOR A 1, RFA1 | 257 | 690 | IPR004591 | GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER) | |
Cone8ag0528 | 871 | FunFam | Replication protein A subunit | 368 | 506 | - | - | |
Cone8ag0528 | 871 | Pfam | OB-fold nucleic acid binding domain | 269 | 353 | IPR004365 | GO:0003676(InterPro) | |
Cone8ag0528 | 871 | SUPERFAMILY | Nucleic acid-binding proteins | 374 | 502 | IPR012340 | - | |
Cone8ag0528 | 871 | SUPERFAMILY | Retrovirus zinc finger-like domains | 816 | 854 | IPR036875 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
Cone8ag0528 | 871 | SUPERFAMILY | Nucleic acid-binding proteins | 521 | 698 | IPR012340 | - | |
Cone8ag0528 | 871 | SUPERFAMILY | Nucleic acid-binding proteins | 255 | 368 | IPR012340 | - | |
Cone8ag0528 | 871 | CDD | RPA1_DBD_A | 258 | 361 | - | - | |
Cone8ag0528 | 871 | Gene3D | - | 6 | 121 | IPR012340 | - | |
Cone8ag0528 | 871 | Pfam | Replication protein A OB domain | 379 | 482 | IPR031657 | - | |
Cone8ag0528 | 871 | CDD | RPA1_DBD_C | 524 | 697 | IPR047192 | - | |
Cone8ag0528 | 871 | Gene3D | - | 368 | 505 | IPR012340 | - | |
Cone8ag0528 | 871 | NCBIfam | replication factor-a protein 1 (rpa1) | 231 | 697 | IPR004591 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
Cone8ag0528 | 871 | Gene3D | - | 255 | 364 | IPR012340 | - | |
Cone8ag0528 | 871 | Gene3D | - | 788 | 855 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone7ag0036 | Cone-Chr7:163234 | Cone8ag0528 | Cone-Chr8:3851334 | 9.21E-252 | dispersed | |
Cone12ag0531 | Cone-Chr12:3699430 | Cone8ag0528 | Cone-Chr8:3851334 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone8ag0528 | K07466 | - | csv:101211358 | 1138.25 |