Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0531 ATGGGAAAGCCTCAGAAAAGGAGCGGGGGAGGAGATGACCTTCTTCTTCACACAGCTGCCAGAAACGGTGATTTCAATTCTCTTACCTCAATCTTAATCTCTAACCCCATCGCTGTCAATTCGAGAGATAAGCACTCTAGAACTCCACTCCATTTAGCTGCATGGTCTGGACATGTAGAGATTGTAGATTATCTCTGCAAGAACAAAGCTGATGTGGGTGCTGCTGCCATGGATGATATGGGTGCAATGCATTTCGCTGCCCAAAAGGGTCATTTAGAAGTTGTTAGAACTCTTCTTATGCATGGTGGTTCCATTAAGGCTTTTACTCGAAAGGGCTTGACTCCGCTTCACTATGCTGTTCAGGGGTCCCACTTGGAACTTGTTAAGTACTTGGTAAAAAAAGGTGGTAGTCTTAGTGCTAAGACCAAAGCTGGAATGACTCCTCTTGATCTTGCCAGCAACGACGAAATCCGGTCTTGTTTAGAAGAATGTGAAAGGTTGAACAAGAGAGGAGTGGATTCGAATAGCAAAGTAGAGAAGAATAAAGAAGAAGAAGAATTGGGTTCTAAGTCGTTGCTTGTGGAAAGAGAAGGTAATGAAGATGTGGATGAGAAGGATGATAATCTGAAGAGAAAGAGTGATAAAGATGGGAGTAAGGAGATTTCGGTTGAATCAAAAAGGCCAAGAGTAGCTCTTGGTCATCTTATGAGCTCAGATGATGTAGAAGATGATGAAGAAAACTTATAG 747 42.57 MGKPQKRSGGGDDLLLHTAARNGDFNSLTSILISNPIAVNSRDKHSRTPLHLAAWSGHVEIVDYLCKNKADVGAAAMDDMGAMHFAAQKGHLEVVRTLLMHGGSIKAFTRKGLTPLHYAVQGSHLELVKYLVKKGGSLSAKTKAGMTPLDLASNDEIRSCLEECERLNKRGVDSNSKVEKNKEEEELGSKSLLVEREGNEDVDEKDDNLKRKSDKDGSKEISVESKRPRVALGHLMSSDDVEDDEENL 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3896268 3898212 - Conep08aG0055200.1 Cone8ag0531 443080

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0531 248 Gene3D - 3 230 IPR036770 -
Cone8ag0531 248 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 13 202 - -
Cone8ag0531 248 ProSiteProfiles Ankyrin repeat region circular profile. 45 72 - -
Cone8ag0531 248 ProSiteProfiles Ankyrin repeat region circular profile. 111 143 - -
Cone8ag0531 248 PRINTS Ankyrin repeat signature 46 61 IPR002110 GO:0005515(InterPro)
Cone8ag0531 248 PRINTS Ankyrin repeat signature 127 141 IPR002110 GO:0005515(InterPro)
Cone8ag0531 248 SUPERFAMILY Ankyrin repeat 14 177 IPR036770 -
Cone8ag0531 248 MobiDBLite consensus disorder prediction 172 227 - -
Cone8ag0531 248 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515(InterPro)
Cone8ag0531 248 ProSiteProfiles Ankyrin repeat profile. 111 143 IPR002110 GO:0005515(InterPro)
Cone8ag0531 248 ProSiteProfiles Ankyrin repeat region circular profile. 78 107 - -
Cone8ag0531 248 MobiDBLite consensus disorder prediction 172 248 - -
Cone8ag0531 248 SMART ANK_2a 11 41 IPR002110 GO:0005515(InterPro)
Cone8ag0531 248 SMART ANK_2a 78 107 IPR002110 GO:0005515(InterPro)
Cone8ag0531 248 SMART ANK_2a 45 74 IPR002110 GO:0005515(InterPro)
Cone8ag0531 248 SMART ANK_2a 111 140 IPR002110 GO:0005515(InterPro)
Cone8ag0531 248 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515(InterPro)
Cone8ag0531 248 Pfam Ankyrin repeats (3 copies) 15 73 IPR002110 GO:0005515(InterPro)
Cone8ag0531 248 Pfam Ankyrin repeats (3 copies) 83 161 IPR002110 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0531 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g894 . . . . . . . Bma14g00116 . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0531 . . . . . . . Blo03g00846 . Bda07g00133 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013469 1 1 1 1 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 26