Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0540 ATGAGTTCTCGTACAGATTTGATAAATGGAAAATCGGAAGTTAGAGATGATGTTTTGGAGAGAGATCCAACTGGACGTTACTTGCGGTATGCTGAAATCCTGGGGAAAGGAGCATGCAAAACTGTATATAAGGCATTTGACGAAGTCAATGGATTAGAAGTCGCTTGGAACCGGGTGAATATTGAGGATTTATTGCAGTCACCAGCACTGCTCGAAAGATTATATTCAGAGGTTCATCTTCTTAAGGCACTGAAGCATGAAAATATTATGAAATTCTATCACTATTGGGTGGATGATGAGAAGAGGACTATTAACATGATAACAGAGTTGTTCACTTCTGGCAGTTTGAGGCAATATCGAAAGAAACACAGGCATGTCGACATGAAAGCGATTAAGAACTGGGCAAGGCAGATTTTACGAGGTTTAAACTATCTTCACAGCCAAAATGCTCCTATAATTCATAGGGATTTGAAGTGCGACAATATTTTCGTTAATGGAAATAGTGGAGAAGTTAAAATTGGAGATCTTGGATTGGCAATTGTTATGCAGCAACCTACTGCCCGTAGTGTTATCGGCACTCCTGAGTTCATGGCTCCGGAGCTTTATGATGAGGAATACAATGAACTTGTCGATATCTATTCTTTTGGCATGTGCATTTTAGAATTGGTCACTTGTGACTACCCATATAGTGAATGCAAAAATCCTGCACAAATATTCAAGAAAGTTACCTCTGGAACCAAGCCTGCTACCCTTAATAAGGTGATGGACCCCCAAGTTAAGCAGTTCATAGAAAATTGTATAGCTCCAGCATCTGAGAGATTGCCTGCTGTTGAGCTCTTAAAAGATCCATTCCTTGCTGGGGAAAATTCTAAGGAGCAGACCGATAAGTCATCCAGTGTTTTGTTTAAAACAACAAAACCCCAGCATACTGATTCTCATCCCATGGACATTGACCCACTCTCCAGGAATCTCTCTTTCAGTGCTTCTAGCATTGATAATAATTCTCCATTCTTGACCCTAGAACTTAAGCGGCTCACTGAGAATCACGAGTTCAGGTTGAAAGGAGAGAAAATAGATAACAGTACAATATCATTATACTCGACCATTTCTGATCCTAAGGGTATAGCAAAGAATATGTACATTCATTTCTCATTTTATCTAGACTCTGATACTGCAATATCAATATCTGCTGAGATGGTTGAGCAAGTTGGCCTGGTTCAAAAAGACGTAGCTATCATAGCAGAGTTGATTGACAGCTTGATTATAACCCTTATACCCACCTGGAAACCCTCTGCTGTTAAAACATCTTGTGGAGTAAATATTTCTTCTTCACAGAAGGACTGTCTAGAACCTCAACCAGATGAAATCTCAATCCTATCATGCTCTTCTTCTGAGTTAGCTGCGATTCCTTTTAATAAGGTGGCCAATGTGGAAGATCAAGAAAATCTCCACTCAATGATTTCAAATATATCGTTAGAGGAAGAAGCGAATACAGCCTTCTCCTCTAATGAACATAATGGCTTTTACGAGAATAACGAAAATAATGGAGATGGAGAAACATATCAAGAGAACCTAAGTTTGTCAAGCATCTTTTCTCTGAGGCTTGAAGGAAAAGATCAAGATGATGAGCTCAAGTCCGAGATTGATGCGATTGACTCGCAGTATCACCAGTGTTTTCGTGAACTCTTGAGAATGAGAGAGGGAGCAATTGAAGATGCTAAGAAGAGGTGGATTGTTAGGAAGAGAATATCTGTCAGTTGA 1761 39.58 MSSRTDLINGKSEVRDDVLERDPTGRYLRYAEILGKGACKTVYKAFDEVNGLEVAWNRVNIEDLLQSPALLERLYSEVHLLKALKHENIMKFYHYWVDDEKRTINMITELFTSGSLRQYRKKHRHVDMKAIKNWARQILRGLNYLHSQNAPIIHRDLKCDNIFVNGNSGEVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYDEEYNELVDIYSFGMCILELVTCDYPYSECKNPAQIFKKVTSGTKPATLNKVMDPQVKQFIENCIAPASERLPAVELLKDPFLAGENSKEQTDKSSSVLFKTTKPQHTDSHPMDIDPLSRNLSFSASSIDNNSPFLTLELKRLTENHEFRLKGEKIDNSTISLYSTISDPKGIAKNMYIHFSFYLDSDTAISISAEMVEQVGLVQKDVAIIAELIDSLIITLIPTWKPSAVKTSCGVNISSSQKDCLEPQPDEISILSCSSSELAAIPFNKVANVEDQENLHSMISNISLEEEANTAFSSNEHNGFYENNENNGDGETYQENLSLSSIFSLRLEGKDQDDELKSEIDAIDSQYHQCFRELLRMREGAIEDAKKRWIVRKRISVS 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3975950 3979570 - Conep08aG0056100.1 Cone8ag0540 443089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0540 586 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone8ag0540 586 FunFam Probable serine/threonine-protein kinase WNK1 13 109 - -
Cone8ag0540 586 SMART serkin_6 28 285 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone8ag0540 586 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 380 421 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Cone8ag0540 586 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 15 515 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Cone8ag0540 586 CDD STKc_WNK 26 285 - -
Cone8ag0540 586 ProSiteProfiles Protein kinase domain profile. 28 285 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone8ag0540 586 Gene3D Phosphorylase Kinase; domain 1 12 109 - -
Cone8ag0540 586 SUPERFAMILY Protein kinase-like (PK-like) 29 334 IPR011009 -
Cone8ag0540 586 FunFam probable serine/threonine-protein kinase WNK9 111 290 - -
Cone8ag0540 586 Pfam Protein kinase domain 31 285 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone8ag0540 586 Gene3D Transferase(Phosphotransferase) domain 1 111 292 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1296 Cone-Chr6:10408117 Cone8ag0540 Cone-Chr8:3975950 1.74E-148 dispersed
Cone8ag0540 Cone-Chr8:3975950 Cone9ag1249 Cone-Chr9:9190995 3.67E-160 dispersed
Cone12ag0543 Cone-Chr12:3849828 Cone8ag0540 Cone-Chr8:3975950 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83111 PF02991 Atg8 4.70E-50 CL0072 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0540 K08867 - csv:101207748 649.818