Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0572 ATGCAACAAGGAGGTGGGGGAAGATCCCAGTCCCAATCCCAACCCCTTCCTCATCCTCAATCCAAATATGGAGTGACGTCAGCACCAGATATTGTTACTACTACCACTACTAGTACTGATCAACCAACGAGCCAGGTTATGGCGGTAGATCAGAGCGAGCAGCCGCAACTTGTTGAAGCAGCATCACCTATCAGCAGTAGACCTCCGGCCGCGGGAGCAGTCAATTTAGATGAGCTCATGCGGTTATCTGTAGCTGCTGGCGGTCTGACGGCTGACGATGACGCACTTGCGGCGGTTGCAGGAGAGGTAGGCTGTGGAAGGGGTGGTGGAGGCGGTGGTCTTATTGTCGGAGGGAATAGATGGCCTCGTCAAGAAACTCTTGCTCTTCTGAAGATTAGATCGGAAATGGATTCAGTTTTCCGTGACGCCTCCGTTAAGGGCCCTCTTTGGGAAGGCGTTTCCAGGAAGCTAGCAGAGCATGGATACAAAAGGAGTGCCAAAAAATGCAAAGAGAAGTTTGAAAACGTTCAGAAATACTACAAACGAACAAAGGAAGGTCGGGCTGGTCGCCAGGATGGCAAAAGCTACAAGTTCTTTAGCGAGCTTGAGGCCCTTCATAGTACCACAGCAGGCATTACTAGCACCCACGTGGAAGTTTCTCAGCCACAAGCTCCACCACCTTCATCCTTGTACCAATACACCAACACAGCCACCACCACCCCCCAAGCTTTCCCTCCACCATTTTCAGTCGGAATGGGTGTAGGCAACCCGATGCCCATCTCATCGGTTAGAATCTCCCCAAGTTCTATCTCTCTAGCACCAGCACAACTAGGTACCTTGGCCGATCATCCATTCGGCATGGGTCCCTCGGTGATGACAACTCATGTGGCGCCTGCTGGCGGCGGCATGCCTTTTGCAGGCGGTATTAGCTTCTCATCCAATAGTCCCTCATCCTCATCCACAGGATCTGATCGAGACAATGATGATGATGATGATGAAGACGATGACGATGACGATCTGGATCATATTGAGCCGTCAAACACGGCCGGAAGCAGCCGGAAACGAAAAAGGGTCACCTCATCGAAAGTTCATAGGATGATGGAGTTTTTCGAAAGCCTAATGAAACAGGTCATGCAAAAGCAAGAGTTGATGCAACAGAGATTTCTCGAAGCGATACACAAGAGAGAGAACGAGAGGATGGTTAGAGAAGAAGCCTGGAAGACGCAAGAGATGACAAGGCTGGCTCAAGAGCACGATCTCATGGCTCAAGAGCGGGCCACCTCCGTGGCAAGAGATGCCGCCATTATTACCTTCCTGCAGAAGATTACTGGTCAGACCGTCCCGTTGCCACCAGCCATTAATAATCCAGCGGCCTCACCACCACATCATGTGGTGCCACCTGCACCTGTCCCTACCCCGCGGACACCACCACCTGCTGTTCCAGCTGCCCAACCTCCACCAGCACCTCCACAATTTTTACAACAACAACCGCGTCGTCATCAACAACAATACCACCAAATTAACCCTAATCAGCAATCTGCTAATGAACCTACTTCTTCTTTGCAAATAATAATGACTGCTCCAGAACAACAAATGTTATTACCATCAGAAGGAGGAAGCTTTGAGCCAACTTCGTCGAGATGGCCAAAACCAGAGGTTCTCGCACTTATAAAGATAAGAAGCGGACTCGAATCGAGGTACCAAGAGGCCGGGCCCAAGGGCCCACTTTGGGAAGAAATCTCCGCTAGAATGCAACAGATAGGGTATAAGAGAAGCGCCAAAAGATGCAAGGAGAAATGGGAAAACATCAACAAGTATTTTAAGAAGGTCAAGGAAAGCAACAAGAAACGGACTGAAGATGCAAAAACCTGCCCTTATTTTCACGAACTCGATGCACTTTACCGGAAAAAGGTGTTGGGAAGTTCTAGTACTACAGTTAGTAGCAGTACGAGTAGGCCAGAACAAGAGCAACAACAAGAAGAAGAAGATCCACAACCACAAACTACACTTGCCACTGGATCAGGAACTGGAAGGGAAACCAAGAAGAAGACATTATGA 2058 49.42 MQQGGGGRSQSQSQPLPHPQSKYGVTSAPDIVTTTTTSTDQPTSQVMAVDQSEQPQLVEAASPISSRPPAAGAVNLDELMRLSVAAGGLTADDDALAAVAGEVGCGRGGGGGGLIVGGNRWPRQETLALLKIRSEMDSVFRDASVKGPLWEGVSRKLAEHGYKRSAKKCKEKFENVQKYYKRTKEGRAGRQDGKSYKFFSELEALHSTTAGITSTHVEVSQPQAPPPSSLYQYTNTATTTPQAFPPPFSVGMGVGNPMPISSVRISPSSISLAPAQLGTLADHPFGMGPSVMTTHVAPAGGGMPFAGGISFSSNSPSSSSTGSDRDNDDDDDEDDDDDDLDHIEPSNTAGSSRKRKRVTSSKVHRMMEFFESLMKQVMQKQELMQQRFLEAIHKRENERMVREEAWKTQEMTRLAQEHDLMAQERATSVARDAAIITFLQKITGQTVPLPPAINNPAASPPHHVVPPAPVPTPRTPPPAVPAAQPPPAPPQFLQQQPRRHQQQYHQINPNQQSANEPTSSLQIIMTAPEQQMLLPSEGGSFEPTSSRWPKPEVLALIKIRSGLESRYQEAGPKGPLWEEISARMQQIGYKRSAKRCKEKWENINKYFKKVKESNKKRTEDAKTCPYFHELDALYRKKVLGSSSTTVSSSTSRPEQEQQQEEEDPQPQTTLATGSGTGRETKKKTL 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4557630 4561688 + Conep08aG0059300.1 Cone8ag0572 443121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0572 685 CDD GT1 546 611 - -
Cone8ag0572 685 FunFam Trihelix transcription factor GT-2 548 609 - -
Cone8ag0572 685 ProSiteProfiles Myb-like domain profile. 546 604 IPR001005 -
Cone8ag0572 685 PANTHER FI21293P1 110 653 - -
Cone8ag0572 685 MobiDBLite consensus disorder prediction 308 322 - -
Cone8ag0572 685 MobiDBLite consensus disorder prediction 1 61 - -
Cone8ag0572 685 CDD GT1 119 184 - -
Cone8ag0572 685 MobiDBLite consensus disorder prediction 325 342 - -
Cone8ag0572 685 SMART sant 544 606 IPR001005 -
Cone8ag0572 685 SMART sant 117 179 IPR001005 -
Cone8ag0572 685 MobiDBLite consensus disorder prediction 1 69 - -
Cone8ag0572 685 MobiDBLite consensus disorder prediction 662 679 - -
Cone8ag0572 685 ProSiteProfiles Myb-like domain profile. 119 177 IPR001005 -
Cone8ag0572 685 MobiDBLite consensus disorder prediction 640 654 - -
Cone8ag0572 685 MobiDBLite consensus disorder prediction 453 493 - -
Cone8ag0572 685 MobiDBLite consensus disorder prediction 640 685 - -
Cone8ag0572 685 MobiDBLite consensus disorder prediction 307 361 - -
Cone8ag0572 685 Pfam Myb/SANT-like DNA-binding domain 546 633 IPR044822 -
Cone8ag0572 685 Pfam Myb/SANT-like DNA-binding domain 119 205 IPR044822 -
Cone8ag0572 685 Gene3D - 548 609 - -
Cone8ag0572 685 Gene3D - 121 182 - -
Cone8ag0572 685 MobiDBLite consensus disorder prediction 450 518 - -
Cone8ag0572 685 FunFam Trihelix transcription factor GT-2 121 182 - -
Cone8ag0572 685 MobiDBLite consensus disorder prediction 494 518 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0052 Cone-Chr8:272598 Cone8ag0572 Cone-Chr8:4557630 1.28E-92 dispersed
Cone8ag0572 Cone-Chr8:4557630 Cone9ag1158 Cone-Chr9:8227165 3.12E-26 dispersed
Cone12ag0575 Cone-Chr12:4259062 Cone8ag0572 Cone-Chr8:4557630 4.56e-312 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46663 PF05903 Peptidase_C97 2.20E-47 CL0125 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0572 - - - 0.0