Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0576 ATGCGGAGTAGAAAGAAGCCATCGTCAAGAGGCCACAATCGATTTGTGGGAGTTCGGCAGAGGCCGTCTGGCCGATGGGTGGCTGAGATCAAGGACTCTCTCCAAAAAGTAAGGCTTTGGCTCGGAACATTCGACACTGCTGAAGATGCTGCACGTGCATACGACGACGCTGCACGTGCCTTACGTGGTACTAATGCCCGGACCAACTTTGAGTTACCATCCTCTACCGCGGCAAATAGTAATACTTCCCGCTACAGCGCCAATATGTCATCGGATTGTGCTGAACCCTTTTCTTTTGAGAAAGTTTGCGTAATGGGAAAGGAGGAAGATGGGCTTCTCGGCGCAATCAAGGCGAAACTGAGTGATGGGAAGGGAGTGCTACGTGTACTGAAATCATCGAACGGTTTCGGTTCGAACCCGGCTCAGATATCGACCGCTCGTTCACTTCCTCGCCCGGTTGGAACAGCAAACCGGCCGGGTCAAGTGGATAGTACTTCTCTAGTAGGATCTAATCATCATAAGCCTCTTGGCGGACCTAATCATAATCATGATGGCGTGCAGTGGAATCAAACCATCCAAATTGCCACAGCAACGCAAGTTGATTGGTCTACTCATGAGCTGTTGACATGTGGAATGCCAAGCTGGACACCTCAGATAAGCCATGTCGCTCCTTCAGATAGCGGTGGTTTGTCTACATGGCAGAACTCTGGGGCAAGTGATTTTTCAGCGGTTAGTTTTTCGAGAATGAATGAATGCTGCGGGGAGATATTGGATGTTGGTAATATCAAATTGAATGAAATAAACATGCAGTCATCTTATAATATGGATGCGATGATAGAAGGTGTTTGGTCTCCGGTCCAACAATCTGTTCACAGTGAGAACAGCGGCTGGGCCAGTGTTAATTGGTCTCATGTGTTAGAGTAA 924 48.38 MRSRKKPSSRGHNRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEDAARAYDDAARALRGTNARTNFELPSSTAANSNTSRYSANMSSDCAEPFSFEKVCVMGKEEDGLLGAIKAKLSDGKGVLRVLKSSNGFGSNPAQISTARSLPRPVGTANRPGQVDSTSLVGSNHHKPLGGPNHNHDGVQWNQTIQIATATQVDWSTHELLTCGMPSWTPQISHVAPSDSGGLSTWQNSGASDFSAVSFSRMNECCGEILDVGNIKLNEINMQSSYNMDAMIEGVWSPVQQSVHSENSGWASVNWSHVLE 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4632783 4633706 + Conep08aG0059700.1 Cone8ag0576 443125

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0576 307 Gene3D AP2/ERF domain 13 72 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0576 307 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 10 180 IPR050913 -
Cone8ag0576 307 SUPERFAMILY DNA-binding domain 14 71 IPR016177 GO:0003677(InterPro)
Cone8ag0576 307 CDD AP2 14 71 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0576 307 Pfam AP2 domain 14 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0576 307 ProSiteProfiles AP2/ERF domain profile. 14 71 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0576 307 SMART rav1_2 14 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0576 307 MobiDBLite consensus disorder prediction 139 181 - -
Cone8ag0576 307 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0576 307 PRINTS Ethylene responsive element binding protein signature 37 53 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0576 307 FunFam ethylene-responsive transcription factor RAP2-11 13 72 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0576 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag1109 Cone-Chr18:8081903 Cone8ag0576 Cone-Chr8:4632783 6.15E-26 dispersed
Cone3ag0559 Cone-Chr3:2765029 Cone8ag0576 Cone-Chr8:4632783 2.63E-25 dispersed
Cone8ag0576 Cone-Chr8:4632783 Cone3ag1463 Cone-Chr3:33278845 1.15E-19 dispersed
Cone8ag0576 Cone-Chr8:4632783 Cone2ag0539 Cone-Chr2:2983160 1.92E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g292 . . . . . . . . . . . . . Car15g01210 . . . . . . . . . . . . . . . . . Cone8ag0576 . . . . . . . . Blo19g00123 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014725 0 0 0 0 0 1 0 1 1 1 1 1 1 0 1 1 1 1 0 1 1 0 1 0 1 1 1 1 1 0 19
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46664 PF01088 Peptidase_C12 3.00E-58 CL0125 Cone TF