Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0582 ATGGGCTGCAACAAGATGCTTCTAGCCGACCGCGTATCTGGTATTAACCATGTTCCATCCAATTACATTCGACCCATCTCGGACCGGCCCAATCTCTCCGACGTCGTATCCAGCGGTATTCCTCACATTGATCTCCATGGCCTCCATGGCCCCAACCACTCTGATATTATAAAACAGATAGGATTGGCCTGCGAACGATATGGTTTTTTCCAGGTTAAGAATCATGGGGTGCCGGAAGAACTGATTAGGAATGTAGTACATGTAGCGAGAGAGTTTTTCCTGTCGCCGGAGAGCGAGAAATTGAAGCTTTACCATGAAGATCATTCCAAAACTACGAGGCTCTCTACGAGTTTCAATGTGCAGACTGAAAAGGTATCCAGCTGGAGAGATTTTCTAAGACTCCATTGCTACCCTCTTGAGGACTATGTTCATGAATGGCCATCTAACCCTCCGTCTTTCAGGAAAGAAGTGGCTCAATACTGTAGCCATGTCAGAGAGCTATTGCTAAAATTGCTTGAGAGCATATCTGAGAGCTTGGGCCTACAGAGAGATTACATTGACAAGGCATTGGCGAAGCATGCGCAGCATATGGCAATGAATTACTACCCCCCCTGTACCCAGCCTGAGCTTACTTATGGATTGCCGGCTCACACTGACCCTAATCTGATCACAATTCTTCTTCAAGATGACGTGGCCGGATTGCAGGTCCTAAAAAACGGAAAGTGGGTTGCTGTCGATCCCATTCCTAATACTTTCATTGTCAACGTCGGTGACCAAATGCAGGTCATAAGCAATGATAGGTATAAAAGTGCGATTCATCGAGCTGTGGTGAACAGTATCAAAGAGCGTATATCAGTTCCAACGTTTTACTGTCCATCATCGGATGCGGTGATTGGGCCGGCGAAAGAACTGCTAGATAGTGATAACGTAGCCATCTATAGGGATTTCACTTACGCGGAATACTATGAGAAGTTCTGGAATAGAGGACTTGCTACAGAATCCTGTCTAGATCTGTTCAAAATTGCTTGA 1029 45.77 MGCNKMLLADRVSGINHVPSNYIRPISDRPNLSDVVSSGIPHIDLHGLHGPNHSDIIKQIGLACERYGFFQVKNHGVPEELIRNVVHVAREFFLSPESEKLKLYHEDHSKTTRLSTSFNVQTEKVSSWRDFLRLHCYPLEDYVHEWPSNPPSFRKEVAQYCSHVRELLLKLLESISESLGLQRDYIDKALAKHAQHMAMNYYPPCTQPELTYGLPAHTDPNLITILLQDDVAGLQVLKNGKWVAVDPIPNTFIVNVGDQMQVISNDRYKSAIHRAVVNSIKERISVPTFYCPSSDAVIGPAKELLDSDNVAIYRDFTYAEYYEKFWNRGLATESCLDLFKIA 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4835565 4837787 - Conep08aG0060300.1 Cone8ag0582 443131

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0582 342 FunFam Protein DMR6-like oxygenase 2 5 329 - -
Cone8ag0582 342 PRINTS Isopenicillin N synthase signature 217 238 - -
Cone8ag0582 342 PRINTS Isopenicillin N synthase signature 252 278 - -
Cone8ag0582 342 PRINTS Isopenicillin N synthase signature 60 77 - -
Cone8ag0582 342 Gene3D - 6 329 IPR027443 -
Cone8ag0582 342 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 193 292 IPR005123 -
Cone8ag0582 342 SUPERFAMILY Clavaminate synthase-like 12 328 - -
Cone8ag0582 342 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 19 324 IPR050295 -
Cone8ag0582 342 Pfam 2OG-Fe(II) oxygenase superfamily 195 292 IPR044861 -
Cone8ag0582 342 Pfam non-haem dioxygenase in morphine synthesis N-terminal 40 148 IPR026992 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0582 K24028 - - mdm:103454840 531.561
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1024 Cone-Chr1:55132884 Cone8ag0582 Cone-Chr8:4835565 5.18E-138 dispersed
Cone20ag0807 Cone-Chr20:5714178 Cone8ag0582 Cone-Chr8:4835565 3.91E-66 dispersed
Cone3ag0222 Cone-Chr3:1171229 Cone8ag0582 Cone-Chr8:4835565 5.06E-83 dispersed
Cone4ag0317 Cone-Chr4:1442966 Cone8ag0582 Cone-Chr8:4835565 7.50E-38 dispersed
Cone5ag0731 Cone-Chr5:3151061 Cone8ag0582 Cone-Chr8:4835565 4.48E-139 dispersed
Cone5ag1617 Cone-Chr5:11352469 Cone8ag0582 Cone-Chr8:4835565 5.71E-58 dispersed
Cone7ag0313 Cone-Chr7:1362057 Cone8ag0582 Cone-Chr8:4835565 1.04E-56 dispersed
Cone7ag1150 Cone-Chr7:8630183 Cone8ag0582 Cone-Chr8:4835565 3.33E-46 dispersed
Cone8ag0582 Cone-Chr8:4835565 Cone8ag0703 Cone-Chr8:7086520 6.06E-73 dispersed
Cone8ag0582 Cone-Chr8:4835565 Cone18ag0977 Cone-Chr18:7203829 2.78E-180 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g273 . . Bda06g01122 . . . . Bma14g00091 . . . . . . . Cpe14g01023 . . . . . . . . Cla10g00077 Cam10g0075 Cec10g0077 Cco10g0081 Clacu10g0075 Cmu10g0921 Cre10g0338 Cone8ag0582 . . . . Csa05g00148 . Cme06g02383 Blo03g00791 . . . . . . . . . . . . . Car16g01165 . . . . . . . . . . . . . . . . Lsi09g00122 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007284 0 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 3 2 1 1 1 1 3 37