Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0590 ATGGCCGTTGTTGAGAATGGTGTTGGTCTGGCCGCGGCTTCAAACTTCGACTCTTCGTCTCAGGATTCTGGTGCATTCGGCAATCAAGATCGGCCGAACGAACCTAGCTTCCATGAGAACAACAATGGCGATACTAACGTTCTCACGTCGCATGACGATCAGACCCGCTACCTCAAGGTTACGCCATCGGCTCCGCATAGCTTCGATCGTACGGCGGTGAAGATCGGGAATACTCAGAATCTGCCTTTGATGCAACGATCCAACGGGGAGGATTTGCAGAAGGAGAGGGATGAGATGGAGGAGAGCTTCAAGCATGATATGAGGGAGTTGCGAGAGCTTATCTCCAAGTTGAACCCCTGGGCTAAGGAGTTTGTGCCTTCTTCTCTTGTGAATAACAGTGGAATCAGTGCAGGGTTTTATAGCAACGCGCTTGTGCAGAACAACAGAAATGGTTTTCTTAATGGAAGCAATGGTCGACGGAGGAAGAACTTTAATCAAGGGAAAAGGAGAATGAACAACAGGACCAGTGAGGCTCAACGAGAAGACATAATTCGAAGAACTGTGTATGTCTCTGACATTGATCATCAGGTCACCGAAGAACAGCTCGCAGCTTTATTTATCAACTGTGGGCAGGTTGTTGATTGCCGTATTTGTGGTGACCCCAATTCTGTCCTTCGTTTTGCTTTTATCGAGTTCACTGATGAAGAAGGTGCACATACTGCTTTGAATCTTGGGGGAACAATGCTTGGATTCTACCCTGTGAGAGTGTTGCCATCTAAGACAGCTATTGCACCAGTTAACCAGACATTTTTGCCTAGGACTGAAGATGAACGAGAGATGTGTGCAAGAACTATATACTGTACAAATATTGACAAGAAGGTTACCCAAGCTGATGTAAAACTCTTTTTTGAATCGGTCTGTGGAGAGGTCTATCGCTTGAGGCTTCTAGGAGACTATAACCATTCTACACGTATTGCCTTCGTTGAGTTCATGATGGCTGAAAGTGCAATTGCTGCTCTCAACTGTAGTGGTGTGGTTCTGGGTTCTCTCCCAATAAGGGTGAGCCCGTCAAAGACACCTGTCCGCCCCCGTGTTCCTCGTCTTCCAATACACTAA 1116 46.86 MAVVENGVGLAAASNFDSSSQDSGAFGNQDRPNEPSFHENNNGDTNVLTSHDDQTRYLKVTPSAPHSFDRTAVKIGNTQNLPLMQRSNGEDLQKERDEMEESFKHDMRELRELISKLNPWAKEFVPSSLVNNSGISAGFYSNALVQNNRNGFLNGSNGRRRKNFNQGKRRMNNRTSEAQREDIIRRTVYVSDIDHQVTEEQLAALFINCGQVVDCRICGDPNSVLRFAFIEFTDEEGAHTALNLGGTMLGFYPVRVLPSKTAIAPVNQTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYNHSTRIAFVEFMMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRVPRLPIH 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4950653 4956285 + Conep08aG0061100.1 Cone8ag0590 443139

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0590 371 Pfam Ataxin-2 C-terminal region 114 128 IPR009818 -
Cone8ag0590 371 SUPERFAMILY RNA-binding domain, RBD 277 364 IPR035979 GO:0003676(InterPro)
Cone8ag0590 371 SMART rrm1_1 284 355 IPR000504 GO:0003723(InterPro)
Cone8ag0590 371 SMART rrm1_1 187 257 IPR000504 GO:0003723(InterPro)
Cone8ag0590 371 MobiDBLite consensus disorder prediction 13 53 - -
Cone8ag0590 371 FunFam Polyadenylate-binding protein-interacting protein 11 152 263 - -
Cone8ag0590 371 CDD RRM1_CID8_like 184 263 IPR034823 -
Cone8ag0590 371 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 159 364 - -
Cone8ag0590 371 Gene3D - 146 264 IPR012677 -
Cone8ag0590 371 Gene3D - 267 364 IPR012677 -
Cone8ag0590 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 283 359 IPR000504 GO:0003723(InterPro)
Cone8ag0590 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 261 IPR000504 GO:0003723(InterPro)
Cone8ag0590 371 SUPERFAMILY RNA-binding domain, RBD 171 263 IPR035979 GO:0003676(InterPro)
Cone8ag0590 371 CDD RRM2_CID8_like 279 360 IPR034825 -
Cone8ag0590 371 FunFam Polyadenylate-binding protein-interacting protein 10 277 355 - -
Cone8ag0590 371 Pfam RNA recognition motif 188 250 IPR000504 GO:0003723(InterPro)
Cone8ag0590 371 Pfam RNA recognition motif 285 352 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0590 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0999 Cone-Chr14:8311931 Cone8ag0590 Cone-Chr8:4950653 8.43E-115 dispersed
Cone15ag0995 Cone-Chr15:8036697 Cone8ag0590 Cone-Chr8:4950653 3.28E-112 dispersed
Cone1ag1017 Cone-Chr1:55099894 Cone8ag0590 Cone-Chr8:4950653 4.49E-135 dispersed
Cone5ag0725 Cone-Chr5:3119691 Cone8ag0590 Cone-Chr8:4950653 4.36E-136 dispersed
Cone8ag0590 Cone-Chr8:4950653 Cone8ag1121 Cone-Chr8:9919319 1.56E-08 dispersed
Cone12ag0580 Cone-Chr12:4405542 Cone8ag0590 Cone-Chr8:4950653 2.34E-243 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g255 . . . . . . . Bma14g00703 . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0590 Cone12ag0580 . . . . . . . . Bda07g00483 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004204 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 2 43