Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone8ag0595 | ATGACCCACGAAGGTTCATCACATTCAGGCAACGGATCAGAGACGGGTTCGATGAAGAAGAAGACCGAAGGAATGGAAGAGGAAAAGAAGAAGGAGGAGCAGAAGAAAGTTCCGCTGCTTAAGCTCTTTGCATTTGCTGATTTCTTTGATTATTTTCTAATGGCCGTCGGATCAGTGGGTGCATGCATACATGGCGCTTCTGTTCCTGTTTTCTTTATCTTCTTCGGCAAGTTGATCAATATAATTGGCTTGGCTTATTTCTTCCCTAAAGAAGCAGCTCCTAAAGTTGCCAAGTATTCGTTGGATTTTGTATACCTGAGCGTGGCTATATTATTTTCATCTTGGACAGAGGTGGCTTGTTGGATGTATACTGGTGAACGACAGTGTTCAAAAATGAGAATGGCATATCTAAGGTCGATGCTGAATCAAGATATTAGCCTTTTTGACACAGAAGCTTCTACTGGAGAAGTTATTGCTGCAATTACCACTGATATTGTGGTCGTTCAAGATGCTATTTCTGAGAAGGTAGGGAATTTCATGCACTACATAAGCAGGTTTTTGTCAGGGTTCATAATTGGGTTTGTAAAGGTTTGGCAAATAAGTCTGGTTACATTATCTATCGTCCCCTTAATTGCCCTTGCCGGAGGTCTCTATGCGTTCGTCACTATCGGTCTTATTGCCAAGGTTCGCAAATCCTATGTCAAGGCTGGTGAAATAGCGGAAGAGATCCTAGGAAACGTCAGAACAGTGCAGGCATTTGCTGGAGAAGAGATGGCAGTGAGATCATACAAAGAAGCTCTAAGTAATACATACATGTATGGGAGGAAAGCAGGATTAGCAAAGGGTTTGGGACTGGGATCCATGCACTGTGTTCTCTTTTTCTCATGGGCACTGCTTGTTTGGTTCACTAGCATTGTCGTTCACAAGGATATTTCCAACGGCGGCGAGTCCTTCACCACCATGCTAAATGTTGTTATTGCTGGCCTCTCACTTGGGCAGGCTGCCCCAGATATTACGGCGTTTGTGAGAGCAAAGGCAGCAGCTTACCCAATATTTGAGATGATAGAGAGGAACACGATGACCAAAACCAGCTCGAAAGCTAATGGCAGAACACTAGAAAAGCTTGAAGGAAACATTCAGTTTGACGATGTCTGCTTTAGTTACCCATCTCGTCCGGATGTTTTTATTTTCGACAAGTTCAGTCTTGATATTCAGGCGGGCAAAATTGTTGCCCTTGTTGGAGGAAGTGGGTCCGGGAAAAGTACTGTCATATCGTTGATTGAACGATTCTATGAACCTCTTTCCGGACAAATACTGTTAGATGGTCATAATGTGAGAGAACTCGACCTCAAGTGGCTTAGGCAACAAATTGGACTAGTTAATCAAGAACCGGCTCTTTTCGCAACGACCATCAGAGAGAACATTTTATACGGAAAAGACGATGCTACCCTCGACGAGATCACACGTGCATCAAAACTTTCAGAGTCTCTCTCTTTCATAAACAACCTCCCTGAGAGATTTGAAACTCAGGTTGGCGAAAGAGGAGTACAACTATCAGGTGGACAAAAGCAAAGAATTGCAATAGCTCGCGCAATAGTGAAAAATCCACCGATCCTATTGTTGGATGAAGCAACAAGTGCATTGGATGCAGAATCCGAGAAGAGTGTTCAAGATGCACTGGATCGGGCCATGGTGGGCCGAACAACTGTCATGGTGGCCCACCGTCTATCTACCATAAGGAATGCTGATATGATTGCTGTTGTTCAAGAGGGAAAGATAGTAGAAACTGGAAGCCATGAGGAGCTCATTTCGAAGCCGAACAGTGCTTATGCTTCTCTTGTTCAGCTCCAAGAGGCAGTATCTTTGCAGCGCTACACTTCTGTCGGGCCTAATTTGGGCCTGTCACCAAGTATAAAGTATTCTCGGGAATTATCTCGCACTAGAACAAGCTTTGGTGCTAGTTTCAACTCTGAAAGGGAATCTGCTGGAGGCATTGGTGCGGATGAATTGAAAGCGGGAAAGCCAAAGCGTGTTTCAAGTAGAAGGCTCTACTCTATGGTGAGGCCGGACTGGGTTTATGGAGTCGTAGGCACTATCTGTGCATTTATTGCAGGGTCCCAAATGCCTCTCTTCGCTCTAGGCGTCTCTCAAGCTCTTGTTTCTTTTTATATGGAATGGGACCAAACCCGACGTGAGATCAGAAAAATTGCTTTTCTCTTCTGTGGGGCATCAGTTATAACTGTCATAGTTCATGCCATTGAACATCTCTGTTTTGGAATTATGGGAGAAAGGCTCACCCTCCGTGTTCGAGAAAAAATGTTTTCTGCCATATTGAGGAATGAGATAGGGTGGTTTGACAACATAGAAAATACAAGTGGAATCCTTTCTTCCCGATTAGAGAGTGATGCAACTCTGTTAAGATCACTAGTTGTGGATCGGTCTACCATTCTTTTACAAAATGTGGGTCTGGTTGTTGCCTCATTTATCATTGCCTTCATCTTAAATTGGAGGCTCACACTTGTTGTCTTGGCGACTTATCCATTGATAGTCAGTGGTCACATAAGCGAGAAACTTTTCATGCAAGGCTATGGAGGTAACTTGAGCAAAGCATATCTTAAGGCTAACATGCTGGCTGGAGAGGCTGTTAGTAACATCCGAACTGTTGCTGCATTTTGCTCAGAAGAAAAGGTGCTTGATCTTTACTCACAGGAGCTTGTAGAGCCTTCTAGGCGGTCACTTGTTCGTGGTCAGATTGCTGGCATATTCTATGGTGTCTCTCAATTCTTCATCTTCTCATCCTATGGCTTGGCCTTATGGTATGGTTCGGTTTTGATGGGAAAGGAGCTAGCTAGCTTTAAATCTGTGATGAAGTCATTTATGGTTCTAATAGTAACTGCCTTAGCCATGGGTGAGACTTTAGCTCTAGCCCCCGACCTATTGAAGGGAAACCAAATGGTTGCATCAGTCTTTGAGGTTATGGACCGCCAGACAGAGGTGTCAGGAGATGTAGGCGAAGAGCTAACTACAGTGGAAGGTTTGATTGAGTTAAGGGGAGTCGAATTTAGATATCCCTCCAGACCAGATGCAGTGATTTTCAGAGATTTCAATCTTCAAGTTCGAGCGGGGAAGAGTATGGCATTAGTTGGACAAAGTGGGTCCGGTAAAAGCTCAGTACTTTCTCTCATACTCCGATTTTATGACCCCACAACCGGAAGAGTCATGATTGACGGGAAGGACATAAAGAAATTAAAGCTGAAATCTCTGAGGAAACACATTGGTCTGGTACAACAAGAACCGTCACTTTTCGGCACATCAATTTACGAAAACATTATATATGGAAAGGAAGGAGCCTCTGAAGGAGAAGTGATGGAAGCAGCCAAGCTTGCTAATGCTCACAGTTTTATTAGTGCCTTACCTGAGGGTTACTCGACAAAAGTGGGTGAAAGAGGAGTGCAACTTTCCGGTGGCCAGAGACAAAGGGTAGCCATTGCTCGAGCCATCTTAAAGAACCCGGAAATCTTATTGCTAGATGAAGCCACTAGTGCTCTTGATGTTGAATCCGAGCGAGTGGTCCAACAAGCTCTTGATCGGTTAATGAAAAACCGGACAACAATAATGGTAGCTCATAGGCTATCTACCATAAAAAATGCTGACCAAATATCGGTTATACAAGATGGTAGGATAATCGAGCAGGGATCACATGAGTCTCTGATAGACAATAGGAATGGGGCTTATTATAAGCTGATTAATATTCAGCAACAGCAGTAG | 3768 | 43.9 | MTHEGSSHSGNGSETGSMKKKTEGMEEEKKKEEQKKVPLLKLFAFADFFDYFLMAVGSVGACIHGASVPVFFIFFGKLINIIGLAYFFPKEAAPKVAKYSLDFVYLSVAILFSSWTEVACWMYTGERQCSKMRMAYLRSMLNQDISLFDTEASTGEVIAAITTDIVVVQDAISEKVGNFMHYISRFLSGFIIGFVKVWQISLVTLSIVPLIALAGGLYAFVTIGLIAKVRKSYVKAGEIAEEILGNVRTVQAFAGEEMAVRSYKEALSNTYMYGRKAGLAKGLGLGSMHCVLFFSWALLVWFTSIVVHKDISNGGESFTTMLNVVIAGLSLGQAAPDITAFVRAKAAAYPIFEMIERNTMTKTSSKANGRTLEKLEGNIQFDDVCFSYPSRPDVFIFDKFSLDIQAGKIVALVGGSGSGKSTVISLIERFYEPLSGQILLDGHNVRELDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATLDEITRASKLSESLSFINNLPERFETQVGERGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDAESEKSVQDALDRAMVGRTTVMVAHRLSTIRNADMIAVVQEGKIVETGSHEELISKPNSAYASLVQLQEAVSLQRYTSVGPNLGLSPSIKYSRELSRTRTSFGASFNSERESAGGIGADELKAGKPKRVSSRRLYSMVRPDWVYGVVGTICAFIAGSQMPLFALGVSQALVSFYMEWDQTRREIRKIAFLFCGASVITVIVHAIEHLCFGIMGERLTLRVREKMFSAILRNEIGWFDNIENTSGILSSRLESDATLLRSLVVDRSTILLQNVGLVVASFIIAFILNWRLTLVVLATYPLIVSGHISEKLFMQGYGGNLSKAYLKANMLAGEAVSNIRTVAAFCSEEKVLDLYSQELVEPSRRSLVRGQIAGIFYGVSQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRQTEVSGDVGEELTTVEGLIELRGVEFRYPSRPDAVIFRDFNLQVRAGKSMALVGQSGSGKSSVLSLILRFYDPTTGRVMIDGKDIKKLKLKSLRKHIGLVQQEPSLFGTSIYENIIYGKEGASEGEVMEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQRQRVAIARAILKNPEILLLDEATSALDVESERVVQQALDRLMKNRTTIMVAHRLSTIKNADQISVIQDGRIIEQGSHESLIDNRNGAYYKLINIQQQQ | 1255 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 5053599 | 5058927 | - | Conep08aG0061600.1 | Cone8ag0595 | 443144 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone8ag0595 | 1255 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 370 | 617 | IPR027417 | - | |
| Cone8ag0595 | 1255 | FunFam | ABC transporter B family member 1 | 41 | 376 | - | - | |
| Cone8ag0595 | 1255 | Pfam | ABC transporter | 398 | 546 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cone8ag0595 | 1255 | CDD | ABC_MTABC3_MDL1_MDL2 | 379 | 617 | - | - | |
| Cone8ag0595 | 1255 | SMART | AAA_5 | 406 | 598 | IPR003593 | GO:0016887(InterPro) | |
| Cone8ag0595 | 1255 | SMART | AAA_5 | 1041 | 1213 | IPR003593 | GO:0016887(InterPro) | |
| Cone8ag0595 | 1255 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 695 | 981 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cone8ag0595 | 1255 | Pfam | ABC transporter transmembrane region | 696 | 966 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cone8ag0595 | 1255 | Pfam | ABC transporter transmembrane region | 59 | 326 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cone8ag0595 | 1255 | ProSitePatterns | ABC transporters family signature. | 518 | 532 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cone8ag0595 | 1255 | SUPERFAMILY | ABC transporter transmembrane region | 42 | 348 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cone8ag0595 | 1255 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 684 | 999 | - | - | |
| Cone8ag0595 | 1255 | FunFam | ABC transporter B family member 4 | 1004 | 1255 | - | - | |
| Cone8ag0595 | 1255 | Gene3D | ABC transporter type 1, transmembrane domain | 41 | 623 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cone8ag0595 | 1255 | ProSitePatterns | ABC transporters family signature. | 1153 | 1167 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cone8ag0595 | 1255 | FunFam | ABC transporter B family member 19 | 369 | 618 | - | - | |
| Cone8ag0595 | 1255 | Gene3D | ABC transporter type 1, transmembrane domain | 638 | 857 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cone8ag0595 | 1255 | CDD | ABC_MTABC3_MDL1_MDL2 | 1014 | 1252 | - | - | |
| Cone8ag0595 | 1255 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 54 | 351 | - | - | |
| Cone8ag0595 | 1255 | Gene3D | - | 369 | 618 | IPR027417 | - | |
| Cone8ag0595 | 1255 | Gene3D | - | 1004 | 1253 | IPR027417 | - | |
| Cone8ag0595 | 1255 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 55 | 343 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cone8ag0595 | 1255 | PANTHER | ABC TRANSPORTER B FAMILY | 13 | 639 | IPR039421 | GO:0005887(PANTHER)|GO:0042626(PANTHER) | |
| Cone8ag0595 | 1255 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1008 | 1252 | IPR027417 | - | |
| Cone8ag0595 | 1255 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 379 | 615 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cone8ag0595 | 1255 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1014 | 1250 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cone8ag0595 | 1255 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
| Cone8ag0595 | 1255 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
| Cone8ag0595 | 1255 | Gene3D | ABC transporter type 1, transmembrane domain | 918 | 1003 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cone8ag0595 | 1255 | SUPERFAMILY | ABC transporter transmembrane region | 676 | 995 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cone8ag0595 | 1255 | Pfam | ABC transporter | 1033 | 1181 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cone8ag0595 | 1255 | FunFam | ABC transporter B family member 2 | 815 | 1011 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone2ag0187 | Cone-Chr2:985768 | Cone8ag0595 | Cone-Chr8:5053599 | 0 | dispersed | |
| Cone3ag0259 | Cone-Chr3:1358853 | Cone8ag0595 | Cone-Chr8:5053599 | 6.60E-150 | dispersed | |
| Cone5ag0291 | Cone-Chr5:1230611 | Cone8ag0595 | Cone-Chr8:5053599 | 4.52E-281 | dispersed | |
| Cone6ag0923 | Cone-Chr6:4731636 | Cone8ag0595 | Cone-Chr8:5053599 | 9.12E-88 | dispersed | |
| Cone7ag1900 | Cone-Chr7:12180404 | Cone8ag0595 | Cone-Chr8:5053599 | 0 | dispersed | |
| Cone8ag0595 | Cone-Chr8:5053599 | Cone9ag0928 | Cone-Chr9:4549763 | 0 | dispersed | |
| Cone12ag0582 | Cone-Chr12:4535622 | Cone8ag0595 | Cone-Chr8:5053599 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone8ag0595 | K05658 | - | csv:101219304 | 2008.42 |