Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0602 ATGGGTAACAGCGAGAATGATAAACCAGCTAAAGACTCTAAAGAGAAGGAAGCGAAGACACCACCTGCTTCTACACAGGAGCAATCTTCAACCACAAACACGAGCCCTGTTAATCCAGACTGGTCAGGATTTCAGGCCTATTCTCCTATTCCCCCACCTGGTTACATGGCATCTAGTCCCCAAGCTCATCCATACTTGTGGGGGGTTCAGCATATTATGCCTCCCTATGGTACTCCTCCACATCCATATGTTGCAATGTATCCTCATGGTGGCATATATGGTCATCCATCAATTCCTCCGGGGACATATCCTTTTAGTCCTTTCCCAATGCCTTCTTCAAATGGAATAGCTGAGGCTTCTGGAAATACACCAGGTAGCTTGGACAAGGATGGAAAGCCATCTGAGTTGAAAGAAAAATTGCCCATTAAAAGATCAAGAGGAAGTTTGGGCAGTTTGAATATGATTACTGGGAAGAGTAATGACCAAGCTAAAGCATCTGGAACATCGGCTAATGGAACATATTCGAAAAGTGCTGAGAGTGGAGGTGAAGATTCAAGTGAAGGAAGTGAGGGAAGTTCCCAGAGTGAGTCGCAATTAAAGACAGGTTCCAGGGACTCTTTTGCCGCTGAAACATCTCAAAATGGAAATTCAGGGCATGGTACTCAGAATGGAGGACCTAATACAGTTCATCCTATGGCTATCGTGCCAATCTCATCTACAGGTGCCCCTGGAACTGTTCCTGGAGGTCCCACCACCAATTTAAATATAGGAATGGACTATTGGGGTGCTCCAACTGCATCCAGTATCCCCTCCTTGACAGGGAAGGTTTCTACATCCTCAGTTGCGGGATGCTTGGTTACTGCGGGATCAAGGGATGGGGTTCAGCCACAACTTTGGTTACAGGATGAAAGAGAGTTAAAAAGACAGAGGCGGAAGCAATCAAACAGAGAATCTGCCCGTCGATCACGGTTGCGGAAGCAGGCAGAATGTGATGAGCTGGCCCAACGAGCTGAAGCCTTGAAGGAAGAAAATGCGAGTCTTAGATCGGAAGTTAATCAGATCAGGAGCGAGTACGAGCGGCTTCTTTCAGAGAATGCTTCCCTCAGGGAGAGGCTAGAGGAGCGAGCTGGAAATGAAGAAGCAAGACCTGGAAGGAATGATCAACATTTGAGCAATGAAACGCAACAAAACACACAATCGCAGGGTAGTAACTAG 1215 46.75 MGNSENDKPAKDSKEKEAKTPPASTQEQSSTTNTSPVNPDWSGFQAYSPIPPPGYMASSPQAHPYLWGVQHIMPPYGTPPHPYVAMYPHGGIYGHPSIPPGTYPFSPFPMPSSNGIAEASGNTPGSLDKDGKPSELKEKLPIKRSRGSLGSLNMITGKSNDQAKASGTSANGTYSKSAESGGEDSSEGSEGSSQSESQLKTGSRDSFAAETSQNGNSGHGTQNGGPNTVHPMAIVPISSTGAPGTVPGGPTTNLNIGMDYWGAPTASSIPSLTGKVSTSSVAGCLVTAGSRDGVQPQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKEENASLRSEVNQIRSEYERLLSENASLRERLEERAGNEEARPGRNDQHLSNETQQNTQSQGSN 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5238875 5245253 - Conep08aG0062300.1 Cone8ag0602 443151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0602 404 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 305 368 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0602 404 MobiDBLite consensus disorder prediction 1 21 - -
Cone8ag0602 404 CDD bZIP_plant_GBF1 308 358 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0602 404 MobiDBLite consensus disorder prediction 1 48 - -
Cone8ag0602 404 PANTHER G-BOX-BINDING FACTOR 3-RELATED 26 398 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0043565(InterPro)|GO:0043565(PANTHER)
Cone8ag0602 404 SMART brlzneu 303 367 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0602 404 MobiDBLite consensus disorder prediction 388 404 - -
Cone8ag0602 404 Gene3D - 306 360 - -
Cone8ag0602 404 MobiDBLite consensus disorder prediction 360 404 - -
Cone8ag0602 404 MobiDBLite consensus disorder prediction 130 144 - -
Cone8ag0602 404 MobiDBLite consensus disorder prediction 360 387 - -
Cone8ag0602 404 Pfam bZIP transcription factor 303 365 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0602 404 Pfam G-box binding protein MFMR 1 99 IPR012900 -
Cone8ag0602 404 Coils Coil 323 378 - -
Cone8ag0602 404 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 310 325 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0602 404 MobiDBLite consensus disorder prediction 114 253 - -
Cone8ag0602 404 MobiDBLite consensus disorder prediction 304 329 - -
Cone8ag0602 404 SUPERFAMILY Leucine zipper domain 306 362 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0602 404 Pfam Disordered region downstream of MFMR 138 270 - -
Cone8ag0602 404 MobiDBLite consensus disorder prediction 149 228 - -
Cone8ag0602 404 MobiDBLite consensus disorder prediction 22 42 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0494 Cone-Chr12:3332470 Cone8ag0602 Cone-Chr8:5238875 1.69E-134 dispersed
Cone12ag0558 Cone-Chr12:4015990 Cone8ag0602 Cone-Chr8:5238875 1.38E-237 dispersed
Cone8ag0602 Cone-Chr8:5238875 Cone9ag1533 Cone-Chr9:11169867 6.83E-41 dispersed
Cone8ag0602 Cone-Chr8:5238875 Cone8ag0496 Cone-Chr8:3532227 1.35E-131 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46665 PF09412 XendoU 4.30E-96 CL0695 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0602 K09060 - vvi:100243644 561.607