Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0607 ATGGAAGCTTCTATCCAGCCTCCGAGACAGACCGATGGAAACCGACACATCTCGCCTGTATACGATGAGAAACGATTCTACGAACCCCGTGCGTCTGGCCAATCTAGCATTTTCAATACGCTATTCGGCGACGTCTTGGATCAATCTACCAGCGCCTCAATCTTTTCCGATGATAATCCATTTCGTAAAAGGCCTCGGGATTTGGGATCAGCGGCCTCTTGTTCGGTCGCAGCTGTTGGTAACCATAGGGATGGCGGCTCCGATAATCCTGATGTTAAGGAGTTGAGGAAGAGGAAGAAGGGGAAAGAGAAAATACATGGAACAGATACTCCTCCTCGTGAGGAAGCTCCTGATATTACTATGCATAACAAGGAATTCAGGAAGAAGAAGAAAGGAGAGATTCCTGATTCGGTCGTTGATTTGAAACAGAGGCTGATGAAAAGCGAAGGGAAAAATACTGTGGTCTTAGATGATGATGTTAAAGGAGCGGTGAAGACGATGAAGAAGAGGAAGAGGGATGATCTTGAGAGGGAATACGAGGCGCGGAAATATGGTTCGGAAGGGGGAGCTGGGGACAGAGGGGAAGTTTCGAGAGGGAAAGTTGTAGGGGAGAAGAGGAAGGTGGTTGATAATTCTGCTGATATGTTGGTTTCGAAGGAAGGTTTCGACGATGATTGCAAGCTTTTGAGAACTGCTTTTGTTGGGAATTTGCCATTGAAGGTGAAGAAGAAGGCTTTGATTAAGGAGTTTACCAAATTTGGAGATGTTGAATCTGTTAGGATTCGATCTGTGCCGATTATTGACAGCAAAAAACCAAGAAAAGGAGCAATAATGTCGAAGCAAATCAATGAATCTGTTGACAGTGTCCATGCTTACATTGTATTTAAAACCGAGAAATCAGCAGAGGCTTCTTTGACCCATAACATGGCTATGTTTGAAGGGAACCATATTCGTGTTGACAAAGCATGCCCACCTAGAAAGAAGCTGAAAGGGGATAATGCTCCTCTTTATGATCACAACAGAACAGTGTTTGTGGGTAACCTCCCATTGGATGTAAAGGATGAAGAATTGTACCAGTTGTTTTGTGGAATCAACAATCTGGCATCCGATCTAGAGGCTGTTCGGGTCATCAGAGATGCTCATTCAAATATTGGGAAGGGATTTGCCTATGTTTTATTTAAGACAAGGGAAGCAGCAAATATTGTCACCAAGAAACGGAACTTGAAGTTGCGGGAAAGGGAGTTACGGATTTTCCATGCAAAACCGAATACAAGTCCTTTGAAGAGAAAGAATGCACAGCCAGGTGATTCCCCATACGGAAAAGAGAAGACATTCACGAAATCTCCAGCATCCTATCAGGGCCTACGTGCAAGCAAATCAGGTGTTCATAAGAAGAGTAACCAAAAACTCGCTCGCATAGAGAAGTTAAAACCAATTACAAAGGTACAAGACAAGCCAACAATGCCCAAGAACAAAAGACCAGCAGTTGCTGCTAGAAAGGCGAAAATTACTGCACTAAAGGATGGGGTTGCTGGGCTGAAGCAAGCCAGGATAAAACACAAGTTAGATAGCAGAACACCAGAGAGCTCTCATAGAAAGAAATTCAGAAATTAA 1614 43.8 MEASIQPPRQTDGNRHISPVYDEKRFYEPRASGQSSIFNTLFGDVLDQSTSASIFSDDNPFRKRPRDLGSAASCSVAAVGNHRDGGSDNPDVKELRKRKKGKEKIHGTDTPPREEAPDITMHNKEFRKKKKGEIPDSVVDLKQRLMKSEGKNTVVLDDDVKGAVKTMKKRKRDDLEREYEARKYGSEGGAGDRGEVSRGKVVGEKRKVVDNSADMLVSKEGFDDDCKLLRTAFVGNLPLKVKKKALIKEFTKFGDVESVRIRSVPIIDSKKPRKGAIMSKQINESVDSVHAYIVFKTEKSAEASLTHNMAMFEGNHIRVDKACPPRKKLKGDNAPLYDHNRTVFVGNLPLDVKDEELYQLFCGINNLASDLEAVRVIRDAHSNIGKGFAYVLFKTREAANIVTKKRNLKLRERELRIFHAKPNTSPLKRKNAQPGDSPYGKEKTFTKSPASYQGLRASKSGVHKKSNQKLARIEKLKPITKVQDKPTMPKNKRPAVAARKAKITALKDGVAGLKQARIKHKLDSRTPESSHRKKFRN 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5722439 5726446 - Conep08aG0062800.1 Cone8ag0607 443156

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0607 537 Pfam RNA recognition motif 343 415 IPR000504 GO:0003723(InterPro)
Cone8ag0607 537 MobiDBLite consensus disorder prediction 86 119 - -
Cone8ag0607 537 Gene3D - 229 329 IPR012677 -
Cone8ag0607 537 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 341 422 IPR000504 GO:0003723(InterPro)
Cone8ag0607 537 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 283 477 - GO:0005730(PANTHER)
Cone8ag0607 537 MobiDBLite consensus disorder prediction 51 119 - -
Cone8ag0607 537 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 230 324 IPR000504 GO:0003723(InterPro)
Cone8ag0607 537 SUPERFAMILY RNA-binding domain, RBD 337 436 IPR035979 GO:0003676(InterPro)
Cone8ag0607 537 SUPERFAMILY RNA-binding domain, RBD 229 330 IPR035979 GO:0003676(InterPro)
Cone8ag0607 537 Gene3D - 330 435 IPR012677 -
Cone8ag0607 537 MobiDBLite consensus disorder prediction 422 447 - -
Cone8ag0607 537 CDD RRM1_RBM34 230 320 - -
Cone8ag0607 537 CDD RRM2_RBM34 342 418 IPR034221 -
Cone8ag0607 537 MobiDBLite consensus disorder prediction 1 23 - -
Cone8ag0607 537 SMART rrm1_1 231 320 IPR000504 GO:0003723(InterPro)
Cone8ag0607 537 SMART rrm1_1 342 418 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0607 K14837 - - mdm:103404088 492.271
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0607 Cone-Chr8:5722439 Cone8ag0608 Cone-Chr8:5730521 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g690 . Blo03g00119 Bda06g01271 . . Bpe07g00216 . . . . . . . . Sed13g0485 . . Bhi11g00020 Tan01g2206 Cmetu06g0815 . . Mch10g1675 . Cla10g00146 Cam10g0141 Cec10g0151 Cco10g0151 Clacu10g0145 Cmu10g0992 Cre10g0403 Cone8ag0607 . . . Lsi07g01181 . . Cme06g02459 . . . . . . . Bma12g00215 . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00155 Chy06g02154 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010480 2 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31