Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0615 ATGCTCGAGTCCGTCAAGTACCTCATCGGCGCCGCTGGGACCAGTGGCTTTGGGTCAAAGTCCACAGCGGAAGAGGTCACTCAAACCTCCGATCTCCGCTCTATCACCGTCATAATCACAGGTGCTACATCTGGGATTGGAGCCGAGACTGCTCGGGTTTTAGCCATGAGAGGAGCTCGGCTAATACTCCCGGCCCGGAGTGTGAAAGCGGCCGAGGAAGCCAAGGCTCGGATTGTGTCGGAGTTTCCCTATTCACAAATTATCATTATGGGACTTGATCTAAGCTCTCTCGCCTCAGTTAGAAACTTCGTCACAGAGTTCGAGTCCCTAGATCTTCCTCTCAACCTCTTAATAAACAACGCCGGAAAGTTCTCGTATGAATATGGTGTTACAGAAGATGGGGTTGAGACAACTTTTGCCACTAATTATCTGGGCCATTTTCTACTGACAAAACTGCTATTGAATAAGATGGTCGAAACGGCGAAAGAAAGCGGTGTTCAGGGGCGAATAGTGAACGTTTCGTCTAGCGTTCATGGCTGGTTCAGCGGCGATATGATGAATTATCTGGGCCAAATAAGCCGAAACCAAAGCCAGTACGATCCGACACGTGCTTATGCACTATCCAAGCTCGCTAACGTTTTGCATACCAAGGAACTAGATCTCACATTGAAGAAAATGGAAGCAAATATAACAGTAAATTGCGTACACCCAGGGATCGTGAGGACCAGACTCACCCGGGATCGTGAGGGTCTACTCACAGATTTTGTGTTCTTTATGGCTTCCAAGCTCTTGAAGACAATTCCTCAGGCTGCGGCAACGACTTGTTACGTGGCAACACATCCAAGGCTGTTTAATGTAAGTGGTAAGTACTTCGCAGATTGCAACGAAGCCTTGACATCTGAATTAGGATGCAACTCAGATGAAGCCTCTCGCTTGTGGTTCACGTCAGAATTCATAGTCTCTAATAAGGGCTCCTCCGCCAAAGTGGTCTTCGATCCAATCAACGCCACGTTAGATTAA 1020 47.94 MLESVKYLIGAAGTSGFGSKSTAEEVTQTSDLRSITVIITGATSGIGAETARVLAMRGARLILPARSVKAAEEAKARIVSEFPYSQIIIMGLDLSSLASVRNFVTEFESLDLPLNLLINNAGKFSYEYGVTEDGVETTFATNYLGHFLLTKLLLNKMVETAKESGVQGRIVNVSSSVHGWFSGDMMNYLGQISRNQSQYDPTRAYALSKLANVLHTKELDLTLKKMEANITVNCVHPGIVRTRLTRDREGLLTDFVFFMASKLLKTIPQAAATTCYVATHPRLFNVSGKYFADCNEALTSELGCNSDEASRLWFTSEFIVSNKGSSAKVVFDPINATLD 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5927691 5929801 - Conep08aG0063600.1 Cone8ag0615 443164

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0615 339 Pfam short chain dehydrogenase 36 177 IPR002347 -
Cone8ag0615 339 Gene3D - 21 323 - -
Cone8ag0615 339 PRINTS Glucose/ribitol dehydrogenase family signature 205 224 IPR002347 -
Cone8ag0615 339 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Cone8ag0615 339 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Cone8ag0615 339 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Cone8ag0615 339 PRINTS Glucose/ribitol dehydrogenase family signature 228 245 IPR002347 -
Cone8ag0615 339 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 30 294 IPR036291 -
Cone8ag0615 339 PANTHER RETINOL DEHYDROGENASE 15 319 - -
Cone8ag0615 339 CDD retinol-DH_like_SDR_c_like 36 313 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0615 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0157 Cone-Chr13:983096 Cone8ag0615 Cone-Chr8:5927691 8.74E-109 dispersed
Cone14ag0073 Cone-Chr14:394425 Cone8ag0615 Cone-Chr8:5927691 8.69E-55 dispersed
Cone16ag0084 Cone-Chr16:445819 Cone8ag0615 Cone-Chr8:5927691 4.80E-106 dispersed
Cone19ag0156 Cone-Chr19:869883 Cone8ag0615 Cone-Chr8:5927691 4.85E-111 dispersed
Cone2ag0923 Cone-Chr2:34998521 Cone8ag0615 Cone-Chr8:5927691 1.59E-109 dispersed
Cone5ag0880 Cone-Chr5:3771236 Cone8ag0615 Cone-Chr8:5927691 1.18E-60 dispersed
Cone8ag0615 Cone-Chr8:5927691 Cone9ag0789 Cone-Chr9:3786302 1.15E-76 dispersed
Cone12ag0597 Cone-Chr12:5299859 Cone8ag0615 Cone-Chr8:5927691 2.81E-205 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g310 Blo02g01124 Blo03g00227 . Bda08g00502 Bpe05g00662 . . . . Cmo16g00644 . Cma15g01280 . Car15g01154 . Cpe14g00505 . . . . . . . . Cla07g00772 Cam07g0831 Cec07g0886 Cco07g0863 Clacu07g0808 Cmu07g0814 Cre07g1168 Cone8ag0615 . . Cone9ag0789 . Csa05g00120 Chy09g01373 Cme07g01630 . . . . . . Bma05g00836 . . . . . . . . . . Bhi12g00031 . . Lac11g0044 . . Lcy12g0041 Cla01g00106 Cam01g0105 Cec01g0106 Cco01g0107 Clacu01g0103 Cmu01g0104 Cre09g2402 Lsi09g00092 Csa04g00593 . Cme09g01920
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002525 1 2 2 1 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 1 2 2 2 2 1 3 1 60