Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0624 ATGATGAAGATGGTGCTAGATTTCACTGCAGCATGGTGTGGACCCTGTAAATTCATGGAACCAACAATCAAAGAATTTTCTGCTAAATACATTGATGTTGAGTTTATTAAGATTGATGTCGACGAGCTAATGGACGTGGCAAAAGAGTATGGGGTGGAGGCGATGCCAACATTCATATTCATTAAGAAAGGAAAAGCAATCGACAAGGTGGTGGGTGTTAGGAAGGAAGAGTTGCAGAAGAAGATTGAAAAACACAGGAAATAG 264 40.15 MMKMVLDFTAAWCGPCKFMEPTIKEFSAKYIDVEFIKIDVDELMDVAKEYGVEAMPTFIFIKKGKAIDKVVGVRKEELQKKIEKHRK 87
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6170987 6171478 + Conep08aG0064500.1 Cone8ag0624 443173

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0624 87 Pfam Thioredoxin 3 84 IPR013766 -
Cone8ag0624 87 PANTHER THIOREDOXIN 4 85 IPR050620 -
Cone8ag0624 87 PRINTS Thioredoxin family signature 4 12 - -
Cone8ag0624 87 PRINTS Thioredoxin family signature 12 21 - -
Cone8ag0624 87 PRINTS Thioredoxin family signature 51 62 - -
Cone8ag0624 87 Gene3D Glutaredoxin 2 87 - -
Cone8ag0624 87 ProSitePatterns Thioredoxin family active site. 5 23 IPR017937 -
Cone8ag0624 87 CDD TRX_family 5 83 - -
Cone8ag0624 87 ProSiteProfiles Thioredoxin domain profile. 1 87 IPR013766 -
Cone8ag0624 87 PIRSF Thioredoxin 1 86 IPR005746 GO:0015035(InterPro)
Cone8ag0624 87 SUPERFAMILY Thioredoxin-like 4 85 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0624 K03671 - - csv:101205407 145.976
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0173 Cone-Chr2:922761 Cone8ag0624 Cone-Chr8:6170987 2.47E-34 dispersed
Cone4ag1941 Cone-Chr4:13701435 Cone8ag0624 Cone-Chr8:6170987 4.44E-29 dispersed
Cone6ag1656 Cone-Chr6:12637216 Cone8ag0624 Cone-Chr8:6170987 1.21E-29 dispersed
Cone7ag1854 Cone-Chr7:11999130 Cone8ag0624 Cone-Chr8:6170987 1.79E-15 dispersed
Cone8ag0624 Cone-Chr8:6170987 Cone9ag1580 Cone-Chr9:11353844 3.79E-15 dispersed
Cone19ag0977 Cone-Chr19:7401626 Cone8ag0624 Cone-Chr8:6170987 6.68E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g838 . . . . . . . . Cmo04g01700 Cmo18g01209 . Cma18g01188 . Car18g01095 Sed08g1715 Cpe09g00142 Cpe01g01434 Bhi07g01632 Tan04g1133 Cmetu02g1744 Lac13g0267 Hepe10g1704 . . Cla05g02485 Cam05g2669 Cec05g2703 Cco05g2738 Clacu05g2671 Cmu05g2525 Cre05g2640 . Cone19ag0977 Cone8ag0624 . Lsi04g00482 Csa05g02401 Chy10g00963 Cme10g00463 . . . . . . . . . . . Cma04g01622 . Car04g01663 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011447 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 1 1 1 1 0 31