Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0627 ATGAGGATAATGATAAAGGGAGGTGTTTGGAAGAACACCGAGGATGAAATTCTTAAAGCTGCAGTCATGAAGTATGGAAAGAACCAGTGGGCTCGTATTTCTTCTCTCCTTGTTCGCAAATCCGCCAAGCAGTGTAAGGCTCGCTGGTACGAGTGGCTAGATCCCTCCATCAAAAAGACTGAGTGGACTCGAGAGGAAGATGAGAAACTGCTTCATCTTGCAAAGCTTATGCCCACGCAATGGAGAACCATTGCTCCAATTGTTGGGCGGACTCCATCACAGTGCCTTGAACGATATGAGAAACTCCTTGATGCAGCATGTGTTAAGGATGAGAATTATGAACCAGGTGATGACCCACGAAAATTGCGTCCGGGAGAAATTGACCCGAACTCTGAATCAAAGCCTGCGCGTCCAGACCCCGTTGACATGGACGAAGATGAGAAGGAAATGCTTTCTGAAGCTCGTGCTCGTTTAGCCAACACAAGGGGTAAGAAAGCGAAAAGGAAAGCCCGAGAAAAACAACTTGAAGAGGCTAGAAGGCTTGCTTCACTGCAGAAAAGGAGAGAACTAAAGGCTGCTGGAATTGATAATAGGCACAGGAAGAGGAAGAGGAAGGGAATTGATTATAATGCTGAAATTCCATTTGAGAAGAGGCCTCCTCCTGGCTTTTTCGATGTTGGCGAGGAAGATAAACCTGTGGAGCAGCCCAAGTTCCCGACCACGATTGAAGAACTTGAAGGAAAAAGGAGAGTGGATCTAGAAGCTCAATTGAGAAAGCAAGACATTGCTAAGAACAAAGTTGCCCAGAGACAAGATGCTCCTTCAGCAATATTGCAAGCCAACAAAATGAATGATCCTGAAACAGTGAGGAAAAGATCAAAACTTATGCTACCTCCTCCCCAGATTTCCGACAAAGAATTGGAGGAGATTGCAAAGATGGGATATGCTAGTGATCTTCTTTCTGGGAACGAAGAACTCTCAGTAGGGAGTGGTGCTACTCGTGCTCTTCTCGCAAATTATGCTCAAACACCACAACAAGGAATGACACCTTTAAGGACCCCACAAAGAACACCTGCTGGAAAGGGTGATGCAATAATGATGGAAGCAGAGAATCTGGCCAGGTTGAGAGAGTCCCAGACGCCTTTGTTAGGAGGACAGAATCCAGAGTTGCATCCTTCAGATTTCTCAGGGGTCACTCCCAAGAAAAGGGAAATCCAGACTCCAAATCTAATGCTCACACCCTCAGCCACACCCGGTGCTGTTGGTCGAACTCCCAAAAGTGGTATGACTCCAGCTAGGGATGGCTTCTCCTTTGGAATGACTCCCAAGGGAACACCCATCAGGGATGAGTTACATATTAATGAAGATATGGATTTGCATGATAGTGCAAAACTTGAGCGGCAGAGACAAGCGGATTTGAAGAGGAATTTGCGATCGGGTTTAAGCGTACTACCACAGCCCAGGCATGAGTACCAGATATTAATTGAGCAACCTACAGAAGATGATGAAGAGCCAGAGCTGAAAATTGAAGAAGATATGTCAGATAGAATTGCCAGGGAAAGGGCAGAGGAAGAAGCAAGGCAGCAAGTACTACTTAGGAAGAGATCAAAAGTGCTGCAGAGGGAACTCCCTAGACCTCCTATTGCTTCATTGGACCTTATGAGAAATTCTTTGTTGAGAGCTGATGGAGACAAGAGTTCTTTCGTACCTCCTACTTCAATAGAGCAAGCTGATGAAATGGTTAGAAAGGAGCTTCTAGCATTACTGGAACATGATAATGCAAAGTACCCACTTGATGAAATAGTTATTAAGGAGAAAAAGAAAGGGGCTAAGCGTCCTGCAAGAGAACCTGCTGCTATCCCTGCAATAGAAGATTTTGAAGAAGATGATCTCCAAGAGGCTGATCATTTAATAAGGGAAGAGGTTCAGTATCTTCGAGTTGCAATGGGACATGAAAATGAATCCCTTAACGAATTTGTTGAAGCACATGCAATGTGCTTGAATGATCTGATGTATTTCCCTACCAGGAATGCTTATGGTCTTTCAAGCGTAGCTGGAAACTTGGAGAAACTGGCTGCTTTGCAAAATGAATTTGAGAATGTGAAGAAGAAAATGGATGATGATACTGATAAGGCAGTCCGGCTTGAGAAAAAAGTTAAACTTCTCACACAGGGTTATGAGATGCGGGCTAAATCAAGTCTTTGGCCACAAATCGAGGCAACTTTTAAGCAGATGGAGACTGCTGCCACAGAACTCGAGTGCTTCCAGGCTTTACAGAAGCAAGAGCAAATAGCCTCATCACACAGGATAAATACTCTCTGGGAGGAGGTCCATAAGCAAAGAGAGCTTGAACGAACTTTGCAGAGGCGATATGGAGATCTTCAAGTGGAGTTGGAGAGAATACAACACCTCATGGATCAGTACAGAAAACAAGAAGTTCAAAAGAAGCAGGAAGAAGAAGTTGCAGTAAAAAATCAAACCGTTGAACAAAATACAGCAGGCGTCACGGAGCCGACTGCCTTATCTAATGATCTAATAACAACAGGTACTTCTGATGTCGCCATGGAAGAAGATCAAACCATCTCTGTTGTGGAAAATAATGTAATAACCAAGTCTTCTGAGCAAGTGGATGATGTTGAAAATCAGATGGAAGGTGTAGTTGAATCTGATAACCCAGATGTTGATTCGACTAAAGAAGAACATACCCTCCCAGAATAA 2718 44.11 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNSESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDNRHRKRKRKGIDYNAEIPFEKRPPPGFFDVGEEDKPVEQPKFPTTIEELEGKRRVDLEAQLRKQDIAKNKVAQRQDAPSAILQANKMNDPETVRKRSKLMLPPPQISDKELEEIAKMGYASDLLSGNEELSVGSGATRALLANYAQTPQQGMTPLRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGQNPELHPSDFSGVTPKKREIQTPNLMLTPSATPGAVGRTPKSGMTPARDGFSFGMTPKGTPIRDELHINEDMDLHDSAKLERQRQADLKRNLRSGLSVLPQPRHEYQILIEQPTEDDEEPELKIEEDMSDRIARERAEEEARQQVLLRKRSKVLQRELPRPPIASLDLMRNSLLRADGDKSSFVPPTSIEQADEMVRKELLALLEHDNAKYPLDEIVIKEKKKGAKRPAREPAAIPAIEDFEEDDLQEADHLIREEVQYLRVAMGHENESLNEFVEAHAMCLNDLMYFPTRNAYGLSSVAGNLEKLAALQNEFENVKKKMDDDTDKAVRLEKKVKLLTQGYEMRAKSSLWPQIEATFKQMETAATELECFQALQKQEQIASSHRINTLWEEVHKQRELERTLQRRYGDLQVELERIQHLMDQYRKQEVQKKQEEEVAVKNQTVEQNTAGVTEPTALSNDLITTGTSDVAMEEDQTISVVENNVITKSSEQVDDVENQMEGVVESDNPDVDSTKEEHTLPE 905
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6190989 6196419 + Conep08aG0064800.1 Cone8ag0627 443176

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0627 905 Coils Coil 684 718 - -
Cone8ag0627 905 MobiDBLite consensus disorder prediction 870 905 - -
Cone8ag0627 905 Coils Coil 167 187 - -
Cone8ag0627 905 Pfam Myb-like DNA-binding domain 10 70 - -
Cone8ag0627 905 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Cone8ag0627 905 MobiDBLite consensus disorder prediction 157 176 - -
Cone8ag0627 905 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 807 IPR047242 GO:0000398(PANTHER)|GO:0000398(InterPro)|GO:0000974(InterPro)|GO:0000974(PANTHER)|GO:0005681(PANTHER)
Cone8ag0627 905 MobiDBLite consensus disorder prediction 222 239 - -
Cone8ag0627 905 CDD SANT 10 53 IPR001005 -
Cone8ag0627 905 FunFam CDC5 cell division cycle 5-like 5 59 - -
Cone8ag0627 905 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Cone8ag0627 905 Pfam pre-mRNA splicing factor component 407 656 IPR021786 -
Cone8ag0627 905 MobiDBLite consensus disorder prediction 891 905 - -
Cone8ag0627 905 CDD SANT_CDC5_II 55 106 IPR047240 -
Cone8ag0627 905 MobiDBLite consensus disorder prediction 411 441 - -
Cone8ag0627 905 Coils Coil 791 821 - -
Cone8ag0627 905 MobiDBLite consensus disorder prediction 213 239 - -
Cone8ag0627 905 FunFam CDC5 cell division cycle 5-like 60 120 - -
Cone8ag0627 905 SMART sant 58 105 IPR001005 -
Cone8ag0627 905 SMART sant 6 55 IPR001005 -
Cone8ag0627 905 Gene3D - 5 59 - -
Cone8ag0627 905 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Cone8ag0627 905 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Cone8ag0627 905 MobiDBLite consensus disorder prediction 264 289 - -
Cone8ag0627 905 Gene3D - 60 114 - -
Cone8ag0627 905 MobiDBLite consensus disorder prediction 113 150 - -
Cone8ag0627 905 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0627 K12860 - - rcu:8258621 1382.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0627 Cone-Chr8:6190989 Cone9ag0610 Cone-Chr9:2888054 9.25E-12 dispersed
Cone12ag0610 Cone-Chr12:5408842 Cone8ag0627 Cone-Chr8:6190989 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone12ag0610 . 1 819 MYB-Related Transcription Factor Family AT1G09770 76.5 0.0e+00 1192.6
Cone8ag0627 . 1 820 MYB-Related Transcription Factor Family AT1G09770 75.4 0.0e+00 1173.7
Cone6ag1069 . 200 677 MYB-Related Transcription Factor Family AT3G18100 55.5 6.6e-151 531.9
Cone6ag1069 . 200 677 MYB-Related Transcription Factor Family AT3G18100 55.5 6.6e-151 531.9
Cone12ag0610 . 1 819 MYB-Related Transcription Factor Family AT1G09770 76.5 0.0e+00 1192.6
Cone8ag0627 . 1 820 MYB-Related Transcription Factor Family AT1G09770 75.4 0.0e+00 1173.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46667 PF13920 zf-C3HC4_3 2.30E-11 CL0229 Cone TF