Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0633 ATGCTTGGTGTTCCTCTCAGGTCTCTTGGTGCTGTAGACACTGAAGACGTGATTAAGGCAAGGAATTATGCCAGTAAAGGTGGTTTTGCCAGTGATGACAGTCCTAGTGGTGGTGCTAATTGGTCTAAGCAGCCAAATACATCATCCCAAACCGGAGATGAAAGTATACCCGCTGAATCAATTTCTTGCAGGACTTGGCCTGTACATGGGGAATATGGGATTAAAGAAAATGGTTTTCATGATGGTGATGACGATTGTATTTCCCCCAGGGGTAATGCCTTCTGCCATACATCTCATCACGGTAAAGTTCTGATTGATGCATCTATAGCTGATGCATTGTCTGGACTCAGCATACAAGATAACTGTAATAAACAGTTTACCAATTCAAAAACATTACTAGCCGCTTCAGTGCAGCAAAATAATGGAGGAACTAACACAGAAAACATATCAGGATTGAGTACTACTTCGAAACCTGCAAATGTTGCTGTTGCCAAGGGGATTGAGTTGCTGTCTTCAAAGAAAGAGAAGAGGGGGAGTTATCTTCCAAATGGAGATTGTGACGAGGATAATTCTGCAAACTTTGGAAAAGTTGATTCAAAGACTTCACATAAAGAAAAAACTGCTGTGGCAAGGCAATATCTCAATTCACATGGAGGGCAAGAAGATGTATGTTGCGGAGAGGCAGGAAAAGGAGTCAATGATGCTGATGCTGATGATGAAGGAGAGGAGAGTCCTCGGAGGTCATCCGAGAACACTGATAATGCTTCTGAGAATGTTGATCCTTCTGCAAGTGAGTCTGGTGATGGTGAGGAATGTTCTCGTGAAGATCCTGCTGTAGATAGGGACCATGATGAGCATGATAATAAGGCTGAGAGTGAGGGAGAGGATGACGGGATGGCTGATGCCAATGAGTTTGAGGATGATTGCCGAGCTATTATTGGAACACAATCGTACATTTTATTCACATTAGACAAGCTAATTTTCAAACTTGTTAAGCTGCTCCGAACTGTTGCCACTGATGAAATGGATAACAAGCTTCTTCAACTACACGCATATGAGAAGTCAAGAAAACACAGAAGATTTGTTGATACTGTTTATTACGAGAATGCCCGTGTGCTTCTGCACGATGATAGTGTATATCGCATTGAATGTTCTTCTGCACCAACTCGTGTTTCTACTCAGCTTATGGACCATGGGCATGATAAACCTGAAGTGACTGCTGTTTCCATGGACCCTAATTTTTTTGCTTATCTCCAGAATGACTATCTTTCAACTTCTAACAAAAAGGACAAGTCTGGGATCTTCTTGGAAAAAAATAAGTACAATTATGACTGTAAAGATGAACTTTCTGCTGCATGCCTTTACATGGAAGGATATTCGATTCTTAATGGTTTGGAGTGTAAGATAGCTTGCAATTCATCAAAGGTCTCATATGTTTTAGATACGGAAGACTGTTTGTTTCATGTAGAAAGCAGAAGGAGAAGTGTATGCAAACTTCGCATGTTACGAAGCCAGGCAAGGCCGCCAAATGGTTGTCCTTGTAAGGCAATGCAGTTCCGCACATTTCTTGCAAAGCATATAGCAATCCCTTGA 1593 41.62 MLGVPLRSLGAVDTEDVIKARNYASKGGFASDDSPSGGANWSKQPNTSSQTGDESIPAESISCRTWPVHGEYGIKENGFHDGDDDCISPRGNAFCHTSHHGKVLIDASIADALSGLSIQDNCNKQFTNSKTLLAASVQQNNGGTNTENISGLSTTSKPANVAVAKGIELLSSKKEKRGSYLPNGDCDEDNSANFGKVDSKTSHKEKTAVARQYLNSHGGQEDVCCGEAGKGVNDADADDEGEESPRRSSENTDNASENVDPSASESGDGEECSREDPAVDRDHDEHDNKAESEGEDDGMADANEFEDDCRAIIGTQSYILFTLDKLIFKLVKLLRTVATDEMDNKLLQLHAYEKSRKHRRFVDTVYYENARVLLHDDSVYRIECSSAPTRVSTQLMDHGHDKPEVTAVSMDPNFFAYLQNDYLSTSNKKDKSGIFLEKNKYNYDCKDELSAACLYMEGYSILNGLECKIACNSSKVSYVLDTEDCLFHVESRRRSVCKLRMLRSQARPPNGCPCKAMQFRTFLAKHIAIP 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6249814 6252965 + Conep08aG0065400.1 Cone8ag0633 443182

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0633 530 MobiDBLite consensus disorder prediction 219 301 - -
Cone8ag0633 530 MobiDBLite consensus disorder prediction 177 205 - -
Cone8ag0633 530 MobiDBLite consensus disorder prediction 267 296 - -
Cone8ag0633 530 PANTHER SIN3B-RELATED 297 495 IPR039774 GO:0000118(PANTHER)|GO:0000122(PANTHER)|GO:0000785(PANTHER)|GO:0003714(InterPro)|GO:0003714(PANTHER)
Cone8ag0633 530 MobiDBLite consensus disorder prediction 232 250 - -
Cone8ag0633 530 MobiDBLite consensus disorder prediction 35 58 - -
Cone8ag0633 530 MobiDBLite consensus disorder prediction 191 205 - -
Cone8ag0633 530 MobiDBLite consensus disorder prediction 24 60 - -
Cone8ag0633 530 Pfam C-terminal domain of Sin3a protein 297 486 IPR031693 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0633 K11644 - - gmx:100817626 374.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0139 Cone-Chr11:619864 Cone8ag0633 Cone-Chr8:6249814 7.06E-48 dispersed
Cone19ag0999 Cone-Chr19:7482066 Cone8ag0633 Cone-Chr8:6249814 2.48E-75 dispersed
Cone8ag0633 Cone-Chr8:6249814 Cone12ag0617 Cone-Chr12:5512424 3.60E-243 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g802 . Blo16g01142 . Bda11g01246 Bpe13g01441 Bpe10g00817 . Bma15g00207 Cmo04g01680 . . . . . Sed01g4034 . Cpe01g01419 Bhi07g01656 Tan04g1162 . . . . . Cla05g02504 Cam05g2688 Cec05g2721 Cco05g2756 Clacu05g2691 Cmu05g2545 Cre05g2660 Cone13ag1005 Cone19ag0999 Cone8ag0633 Cone12ag0617 Lsi04g00502 Csa05g02381 Chy10g00946 Cme10g00481 . . Bda07g01576 Bda11g01246 Bpe11g01747 . Bma01g00071 . . . . Cma04g01604 . Car04g01646 . . . . . . . . . . . . . . . . . . Csa05g01727 Chy09g00667 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0024746 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 2