Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0636 ATGAAAACCCATCCTCCCTTCTTCCTACAATTTTTATCCATCACCTTCTCTCTCATATTGGGCCTAGCCCAACCTGACCCCGATCCACTTCAAGATTACTGCATTGGGGATCCTAAGTCTTCTTCCGACACCTTTTTCATTAATGGTATGCCTTGTTTAAACCCGGATTTAGCATCAGCATCCCACTTCACAACCTCTGTTTTAGCGAGACCGAGTTATACCCGATCCAATGTGTTCGGGTTCAACGTGACGTTCACAAATGTTGTAAACTTGCCTGGGCTGAACACATTGGGCTTGACAATGGCCAGAGTTGACATAGCAGAATCTGGACTTGTACCTTTCCACTCGCACCCACGGGCATCGGAAGTGATCATCTGCCTCAAGGGTAAGATTTTAGTGGGCTTTGTGGACACGTCTAATCGTGTCTTTACAGAGACAATTTCGCTCGGTGAATCATTCGTGTTTCCAAAGGGTCTGACTCATTTTTTCTACAATCAAAACCCAAAAAGCCTAGCAGTGGCTATTTCTGGGTTCAATAGCCAGAATCCTGGGGTCCAAATTGCACCACTTGCTGCCTTCAAGTCCGAGCCTGAAATTCAAGATGTGATATTGGAAAAGTTGTTCCAAATAAACGGCCAGGATCTGACAAGGATCCGTAGGAACCTCGGAGGATGA 675 45.78 MKTHPPFFLQFLSITFSLILGLAQPDPDPLQDYCIGDPKSSSDTFFINGMPCLNPDLASASHFTTSVLARPSYTRSNVFGFNVTFTNVVNLPGLNTLGLTMARVDIAESGLVPFHSHPRASEVIICLKGKILVGFVDTSNRVFTETISLGESFVFPKGLTHFFYNQNPKSLAVAISGFNSQNPGVQIAPLAAFKSEPEIQDVILEKLFQINGQDLTRIRRNLGG 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6271713 6272387 - Conep08aG0065700.1 Cone8ag0636 443185

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0636 224 Pfam Cupin 75 213 IPR006045 -
Cone8ag0636 224 SMART Cupin_1_3 65 216 IPR006045 -
Cone8ag0636 224 CDD cupin_OxOx 26 222 IPR001929 GO:0030145(InterPro)
Cone8ag0636 224 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 25 219 - GO:0005618(PANTHER)
Cone8ag0636 224 PRINTS Germin signature 145 165 IPR001929 GO:0030145(InterPro)
Cone8ag0636 224 PRINTS Germin signature 115 135 IPR001929 GO:0030145(InterPro)
Cone8ag0636 224 PRINTS Germin signature 179 194 IPR001929 GO:0030145(InterPro)
Cone8ag0636 224 Gene3D Jelly Rolls 25 224 IPR014710 -
Cone8ag0636 224 ProSitePatterns Germin family signature. 110 123 IPR019780 GO:0030145(InterPro)
Cone8ag0636 224 SUPERFAMILY RmlC-like cupins 26 221 IPR011051 -
Cone8ag0636 224 FunFam germin-like protein subfamily 2 member 1 25 224 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0636 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag0028 Cone-Chr7:122390 Cone8ag0636 Cone-Chr8:6271713 2.67E-29 dispersed
Cone8ag0636 Cone-Chr8:6271713 Cone9ag1173 Cone-Chr9:8364696 3.28E-28 dispersed
Cone8ag0636 Cone-Chr8:6271713 Cone19ag0103 Cone-Chr19:586357 2.35E-54 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g797 . Blo16g01144 . . Bpe13g01443 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0636 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012955 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28