Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0641 ATGGCAGAGGCCCCGAGGGGGCGAGTCACCATTACTCTTGGGCGTAGTGGCCAGGTAGTAAAGATGCCGGGACCTGTGCAAGGTGGTTATTTTACTGATTCTGTGGAAATAGCTGGAACAAAGCGGTCTGTAAGAGATAGATTAGGAAGTAATGTGGATAGTGAGTACGAAAACCATTTTAACAATAAGCGGCAACGAGGAGATGTTGGCATGTCGAGTTTGAGCGGTACTGGTTTCAATGATATGGGGGTTGGTAAAAATGACCTTCGATATAAACTATTGCAAAAAGACGCAATGAGACGAACTCGGAGTGAAAATGGAAAGCAAGTGGATCTTCGTGAGAAGCTGTCAAAGCCAAAGCTTAAGACTGCTCAACATCCCATTCCCAGCCCTGATTTGCGGCAACCTGTGCCTCAATTGCAAGATCCAAGGATGATGAGTAAAGTTTCTTCCACTCGAACCGCCGATGATTTCCGCCAGATGGACTCGTATAGAAATCCTTATACTACCTGGACTTTGGATCACTTGAGACGAAGATCCCCAGATAGGATCTTAGGAGCTCCAAGGGGTCTCTCTCCACAAAGGAATGTGGAGAAAGTTCAAAGAAGGGGTCTTTCTTCACCAAGGAGTGTGGAACAATTACAAAGAAGAGGTCACTCTCCTGCAAGGAATGTGGAGCAACTACAAAGAAGAGATCGCTCTCCACCAAGGAATGTGGAGCAACTACTGAGAAGGGGTCTATCTCCCCAAAGGAATGTAGAACAGCTACATAGAAGGGGTCTCTCTCCACAAAGGAATGTGGAGCAGCTACAGAGAACGACGTTGAACAGGAGTTATGACAATGTGAGATCAGGAAGTTATTTTACTAAAGATGTTCACCATGCTTCAATGCCTATGAATACTGCACTTTTTATGACGAACTCGACGCCGCCTCCAGTATCTGCAAAGCCTGCTGCATCTGTTCTCAGCCAACTTCCTCCATCAAGTGTTCTCGGACCGAAAAATCCATATGCAGTAGAAGAACGACAAACAGTTGATGGCTTGTTACATTTGCTTGGATTGGGGAAATATGCGATACTTTTTAAAGCTGAAGAAGTAGATATGACAGCCTTGAAGCAGATGGGTGAGAATGACCTCAAAGAGATTGGAATACCTATGGGACCAAGAAAAAAACTTCTTCTTGCCCTTGCACCACGAGCAAAAAGACAGGCATGA 1215 45.27 MAEAPRGRVTITLGRSGQVVKMPGPVQGGYFTDSVEIAGTKRSVRDRLGSNVDSEYENHFNNKRQRGDVGMSSLSGTGFNDMGVGKNDLRYKLLQKDAMRRTRSENGKQVDLREKLSKPKLKTAQHPIPSPDLRQPVPQLQDPRMMSKVSSTRTADDFRQMDSYRNPYTTWTLDHLRRRSPDRILGAPRGLSPQRNVEKVQRRGLSSPRSVEQLQRRGHSPARNVEQLQRRDRSPPRNVEQLLRRGLSPQRNVEQLHRRGLSPQRNVEQLQRTTLNRSYDNVRSGSYFTKDVHHASMPMNTALFMTNSTPPPVSAKPAASVLSQLPPSSVLGPKNPYAVEERQTVDGLLHLLGLGKYAILFKAEEVDMTALKQMGENDLKEIGIPMGPRKKLLLALAPRAKRQA 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6301495 6305680 + Conep08aG0066200.1 Cone8ag0641 443190

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0641 404 MobiDBLite consensus disorder prediction 98 154 - -
Cone8ag0641 404 Pfam SAM domain (Sterile alpha motif) 343 396 IPR001660 GO:0005515(InterPro)
Cone8ag0641 404 MobiDBLite consensus disorder prediction 98 121 - -
Cone8ag0641 404 MobiDBLite consensus disorder prediction 183 239 - -
Cone8ag0641 404 MobiDBLite consensus disorder prediction 59 78 - -
Cone8ag0641 404 PANTHER SCP160 3 399 - -
Cone8ag0641 404 MobiDBLite consensus disorder prediction 199 214 - -
Cone8ag0641 404 SUPERFAMILY SAM/Pointed domain 341 397 IPR013761 -
Cone8ag0641 404 SMART SAM_4 337 402 IPR001660 GO:0005515(InterPro)
Cone8ag0641 404 Gene3D - 341 404 IPR013761 -
Cone8ag0641 404 MobiDBLite consensus disorder prediction 223 239 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0641 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0748 Cone-Chr20:5147321 Cone8ag0641 Cone-Chr8:6301495 9.10E-12 dispersed
Cone11ag0134 Cone-Chr11:599942 Cone8ag0641 Cone-Chr8:6301495 4.37E-21 wgd
Cone12ag0630 Cone-Chr12:5678133 Cone8ag0641 Cone-Chr8:6301495 1.37E-193 wgd
Cone18ag1347 Cone-Chr18:9293395 Cone8ag0641 Cone-Chr8:6301495 5.50E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g789 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0641 . . . . . . . Bda07g01570 . Bpe11g01738 . . . . Cmo04g02857 . . . . . Cpe13g00922 Cpe07g00639 . . . . . . . . . . . . . . . Csa05g01723 Chy09g00662 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004993 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 1 5 3 41