Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0642 ATGTGGCTTATGCGAGCGTATTTAAGGCAATTATTGAGCGTTATAGTGGATGTTTACGTACTCTTCATTGTTAATAAGCAAATAAATGGGTGGCCCTTGCAACTCCTCTCGGTTGCTTGCTTGTCACTAGCTACTAAAATGGAGGAGCCTCTGGTTCCTTCTTTATTAGATCTTCAGGTTGAAGGAGCCAAATACATATTTGAGCCTAGAACTGTATATCGGATGGAACTTCTGGTGCTTAGAGTTCTGGATTGGCGGCTTCGATCCGTAACACCATTCAGCTTCGTCGAATCCTTCGCAAGAAAGCTCGATTCAACGGGAAAGTTTATGAGTTTTCTGATTTATAGATCAACAGACATTATCCTGTCTACTATCAGAGACGCCAGCTTTCTTGAATACTGGCCATCATGCATTGCTGCCTCAGCCTTACTTTGTGCAGCAAGTGAAATTCCAATCTTGTCCATTGTAAATCCTGATCATGCTGAATCATGGTGTATCGGATTAAGAAAAGAAAAGATCAGAGGATGCTATCAATTAATGCAAGAATTTCTGTTAATTAACAAGAGCCAGATGAAGCCTAAGAATATTTTCCCACAGCTCCGAGTGACAGTTATGCCCTTGATGTGGTTCAGTGACTCGTCATCATCTTCATCATCCTCATCATCTTCATCTCTTAAGAGGAGAAAATTAAAATAA 696 40.52 MWLMRAYLRQLLSVIVDVYVLFIVNKQINGWPLQLLSVACLSLATKMEEPLVPSLLDLQVEGAKYIFEPRTVYRMELLVLRVLDWRLRSVTPFSFVESFARKLDSTGKFMSFLIYRSTDIILSTIRDASFLEYWPSCIAASALLCAASEIPILSIVNPDHAESWCIGLRKEKIRGCYQLMQEFLLINKSQMKPKNIFPQLRVTVMPLMWFSDSSSSSSSSSSSSLKRRKLK 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6340215 6343205 - Conep08aG0066300.1 Cone8ag0642 443191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0642 231 CDD CYCLIN_AtCycD-like_rpt2 90 180 - -
Cone8ag0642 231 SMART cyclin_7 1 81 IPR013763 -
Cone8ag0642 231 PANTHER CYCLINS 15 188 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cone8ag0642 231 SUPERFAMILY Cyclin-like 16 87 IPR036915 -
Cone8ag0642 231 Gene3D - 22 88 - -
Cone8ag0642 231 MobiDBLite consensus disorder prediction 212 231 - -
Cone8ag0642 231 Pfam Cyclin, N-terminal domain 22 88 IPR006671 -
Cone8ag0642 231 Pfam Cyclin, C-terminal domain 90 199 IPR004367 -
Cone8ag0642 231 Gene3D - 89 177 - -
Cone8ag0642 231 SUPERFAMILY Cyclin-like 71 195 IPR036915 -
Cone8ag0642 231 SMART Cyclin_C_2 90 219 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0642 Cone-Chr8:6340215 Cone8ag1114 Cone-Chr8:9891151 4.61E-32 dispersed
Cone12ag0627 Cone-Chr12:5632982 Cone8ag0642 Cone-Chr8:6340215 4.04E-113 wgd
Cone13ag1015 Cone-Chr13:8489773 Cone8ag0642 Cone-Chr8:6340215 1.33E-90 wgd
Cone19ag1009 Cone-Chr19:7532746 Cone8ag0642 Cone-Chr8:6340215 1.42E-89 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0642 K18810 - gmx:100775224 253.447