Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0643 ATGTTGAACTCTATCTCCCTACTAAGCTTCCAATCCACCGCCATCTCCGCCTCCTCCTCACACTTAAACCCTTACAAAACTCACCTCTCTCTCTTCCCAACCACACATTGTTCCGTTAATCCACTCTTCGTAGCTCTCTTCGGAACCGTCTCCTTCCCCTCTTCATTCCATCACCATCTCAGTTTTCGTGCTCTTAATGTCTCGCCGGAACGTACCGGATTCCGTGTGTGCGCGATGAAGAAGCGGCGGAAGGGTGGGGGGGAAGGCGGCGGAACTGGCGTCATGGAACTGAAAGACTCTGATGATGAAGACTATCATGATTTTGACAATGATGATGAGGATGATTTTGACGACGAAGATGGTGATGAGGAAGACGAGGGGTTGCCTTTGCCGTTGAGGAAGATGAATTGGTGGATTCAGAACAAACCTCGTGGATTTGGTGAGGGAAAAGAGTACGATACTTCTATTGAAGACAAACTGTTCGACGAAATGGAGCAGAGTAGGTTGGCTCAGGCTGCTAATCTCAATAAGCTTAAGAACGATTCCCTCAATCGCCCCCTGGAGAAGAAAGCTTCTGAAGCTGTTATGAGTGGAGTCCGAGTCAGAGTGATCAACCTTCCTAGAAAGAAGAACATCCACAGAGACTTGAAATCAGCTTTTCAAGGTGTCCAAGGGATTTTGAATATCAATCCAGCAGTTACTGGTAACAAGAAGACTAGGGACCCTGTCTGCAAGGGCTTTGCTTTTGTTCATTTCAAGTCTGAGCAAGATGCGACAAGGTTTATGCGGACATTTTCTGGAGAAACCTTAACATTTGGGAAGATTCAGAAGCAAATAAAATGCGAGCTGGTGAATCCACAATCACCCTCTATCTCTACTCTGGACCATTCAACAGCTAAACCAAGTACTTCCCAATTAGCAATAATTCCTGAAGTAGAAATAGAGCAAGATTCTGACACTTACATCAATGATTCTTCCCTTGAGCAATGGGATGATGAAACCTCATTTGAGGATTTTGATGAAGATGATCCAAATGAGGAGTTTATAGAAACGGTGGTTGAAAAAATTAGAGAGGATCCAGAATTGGAATCAGAATCCATGACACAATCTTCTTCATCTCCAAAAGATCTCGAAACAGTCCATGCAATAGAGAGAATCCGAGCATTGGAGAAAAGGTTACTTGCTAGGGGAAAAAATGAGGAAGTTGCTCAGGAGAAGCCGGGGAAACAAAAAACAGAAAATGCTCCAAGGAAAAAGCCAGTCGCAAGGGAAAAGGGAGAGAAGACGAAGAAGCTAGCAATTCCTGGATCAGCAAAGAGGTTAAAGGTAAAGGAGAAGGCCATGTTAGCCGATGTGTTCTCCAGATACGGAAAAGTGTCTGCCAAGGATGTAAAAAGAAGATCACAGGAGGCTCTTGAATCAGAGAATGTAGGAGCAATTTGTTCAACATCTACTTCAACCGAGCCCTTGAGAAAGCAGGCCAAGTTAGATCATGCCAATGCCGCCCAAGTATCATCCTCTGATTGTTCCTGTATTCTTGAGTTTGATGGTGCCTCGAAAGGAAATCCCGGACAAGCTGGGGCAGGAGCAATATGTAGACTGCGTGAAGGGTTGGGAATAGCAACAAATAATGTTGCTGAATACAGAGCTGTGCTTTTGGGATTGAAATATGCTCTTAAGAAAGGTTTTACTAAGATCCAAGTCCAAGGTGACTCTAAGCTTGTCTGCATGCAGGTTCAAGGATTATGGAAGGTAAAAAAAGAGAACATGTCTGATTTATATGACGAAGTAAAGACGCTGAAGGATAATTTCACATCATTTGAGATCAGTCATGTTCTAATGGGCTTAAACTCTGATGCTGATGCTCAAGCAAACTTGGCTGTTAGGCTTGCCGAGGGCCAAGTCGAAGAGGAGTGA 1917 44.18 MLNSISLLSFQSTAISASSSHLNPYKTHLSLFPTTHCSVNPLFVALFGTVSFPSSFHHHLSFRALNVSPERTGFRVCAMKKRRKGGGEGGGTGVMELKDSDDEDYHDFDNDDEDDFDDEDGDEEDEGLPLPLRKMNWWIQNKPRGFGEGKEYDTSIEDKLFDEMEQSRLAQAANLNKLKNDSLNRPLEKKASEAVMSGVRVRVINLPRKKNIHRDLKSAFQGVQGILNINPAVTGNKKTRDPVCKGFAFVHFKSEQDATRFMRTFSGETLTFGKIQKQIKCELVNPQSPSISTLDHSTAKPSTSQLAIIPEVEIEQDSDTYINDSSLEQWDDETSFEDFDEDDPNEEFIETVVEKIREDPELESESMTQSSSSPKDLETVHAIERIRALEKRLLARGKNEEVAQEKPGKQKTENAPRKKPVAREKGEKTKKLAIPGSAKRLKVKEKAMLADVFSRYGKVSAKDVKRRSQEALESENVGAICSTSTSTEPLRKQAKLDHANAAQVSSSDCSCILEFDGASKGNPGQAGAGAICRLREGLGIATNNVAEYRAVLLGLKYALKKGFTKIQVQGDSKLVCMQVQGLWKVKKENMSDLYDEVKTLKDNFTSFEISHVLMGLNSDADAQANLAVRLAEGQVEEE 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6364683 6369863 + Conep08aG0066400.1 Cone8ag0643 443192

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0643 638 Pfam Reverse transcriptase-like 515 626 IPR002156 GO:0003676(InterPro)|GO:0004523(InterPro)
Cone8ag0643 638 Gene3D - 191 292 IPR012677 -
Cone8ag0643 638 ProSiteProfiles RNase H type-1 domain profile. 507 629 IPR002156 GO:0003676(InterPro)|GO:0004523(InterPro)
Cone8ag0643 638 Gene3D - 510 633 IPR036397 GO:0003676(InterPro)
Cone8ag0643 638 SMART rrm1_1 200 282 IPR000504 GO:0003723(InterPro)
Cone8ag0643 638 MobiDBLite consensus disorder prediction 397 431 - -
Cone8ag0643 638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 286 IPR000504 GO:0003723(InterPro)
Cone8ag0643 638 FunFam RBR-type E3 ubiquitin transferase 511 631 - -
Cone8ag0643 638 CDD RRM_SF 201 270 - -
Cone8ag0643 638 CDD RNase_HI_like 511 629 - -
Cone8ag0643 638 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 14 465 - -
Cone8ag0643 638 MobiDBLite consensus disorder prediction 102 126 - -
Cone8ag0643 638 SUPERFAMILY Ribonuclease H-like 511 625 IPR012337 -
Cone8ag0643 638 SUPERFAMILY RNA-binding domain, RBD 193 290 IPR035979 GO:0003676(InterPro)
Cone8ag0643 638 MobiDBLite consensus disorder prediction 82 129 - -
Cone8ag0643 638 MobiDBLite consensus disorder prediction 358 377 - -
Cone8ag0643 638 Pfam RNA recognition motif 203 270 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0643 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0131 Cone-Chr11:593158 Cone8ag0643 Cone-Chr8:6364683 1.18E-51 wgd
Cone12ag0628 Cone-Chr12:5646784 Cone8ag0643 Cone-Chr8:6364683 1.19E-99 wgd
Cone18ag1350 Cone-Chr18:9296925 Cone8ag0643 Cone-Chr8:6364683 9.60E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g776 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0643 Cone12ag0628 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008214 1 1 0 1 1 1 1 1 1 2 1 1 1 2 1 1 1 1 1 1 3 1 1 1 1 1 0 3 2 1 35