Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0644 ATGGCTTCCACTTCCCTTATCTCTCTCTACTGTCATCCAAAGAATTTGCTCCGACCCCTACCGCATAAGCAAAGGCTTCGAGGCCACCTTTTAGGGTGTTCTAGCTCAGGCTTCTATGGTGCATATGGCGCGCTGGTTCCAGTAACTGTTCTGGTTATAAGTTCGAAAAGGAATTTGAGATTCAAAAGTTTGATCGTAAAGGCTGCTTATGGAGCCGAGGCAGGTTCTAGGCGATCTCGGAGAGTTTACAGGGAGTCTCAAGCCCAGAGCTCCTCGTTAATGGCCCCAGTGAAGCAGGTCTCCTCTTTTGTTCTGCCTACCGGCGTTTTTGTTGCTGTTACTTTCGTTGTGTGGAAATTGGTGGAGAAACTTCTTATTCCAAAGCCAGAAAAACCTGTGGAAAGTAAACCTCCTGCAGATGGAATGAAATGGTCCTTTGCTGCTGGCACCAATCTGTTATCAGGTCTTGGTGCTAAGGTTGACCGAGAATCAAAGCAGAAGCTGAATGAATTTGCAAAAGAACTCAGGACATTTAGTAGTGTTGACATGTCAGGGCGCAACTTTGGTGACGAAGGACTAATTTTTCTTGCTCAGAGTTTAAGATACAACCAGACTGTTGAGGAAGTAAATTTTTCTGCAAATGGAATAACGGCTGAGGGAATAAAAGCCTTTGATGGCGTTCTTCAGTCAAATATTGTGTTGAAGACTCTTAATCTATCTGGGAATGCTATTGGAGATGAAGGAGTTAAGTTACTATGTGAGATATTGGTGGATAATGCAAGTATTGAGCACCTTCATCTAAACAGCACTGACTTCGGAGATGAGGGTGCAAAGGCTGTTGCAGAGATGATGAAGAAAAATGCAAGCTTGCGTGTTCTTGAACTCAACAACAATATGATAGACTATTCTGGATTCACAAGTCTTGCTGGAGCTCTTCTTGAGAATAACACAATTCGAAATATACATCTCAATGGCAATTATGGTGGAGCTTTGGGGGCTAATGCTTTGGCTAAAGGACTTGAAGGGAACAAGTCTTTAAGGGAGCTGCACCTGCATGGAAATTCTATAGGTGATGAGGGAGTGCGTGCTTTAATGTCAGGCCTATCTTCACATAAAGGAAAAGTTACGCTCCTTGATCTAGGAAACAACTCAATTACTGCAAGGGGTGCCTTTCATGTTGCTGAATTTGTCAAGAAGGCCAAGAGCTTGTTATGGTTGAACCTGTACATGAATGACATTGGTGATGAGGGAGCCGGAAAAATTGCAGATGCATTAAAGCAAAATCGGACGATAGCAACTATAGATCTGGGAGGAAATAATATACATGCGAAAGGAGTCAGTGATATTGCTAAAGTTTTGAAGGATAACTCGGTCATTACAACTTTGGAACTTGGTTACAATCCAATAGGACCAGATGGAGCAAAAGCTTTATCAGAGGTTCTTAAGTTTCATGGAAATATAAAAACACTCAAGCTCGGTTGGTGCCAGATTGGACCAAAGGGTGCAGAGTTCATTGCCGATACTTTAAAATATAATACTACCATATCTGTTCTGGACTTACGGGCAAACGGACTCAGAGATGAAGGCGCTATTTGTCTAGCTCGAAGCTTGAAAGTCGTTAATGAAGCCTTAACCTCGTTAGATTTAGGATTCAATGAAATAAGGGATGATGGGGCTTTTGCGATTGCTCAAGCACTAAAAACCAACGAAGATGTAGCAGTTTCTTCTTTGAACCTTGCCAGTAACTTCCTAACAAAATTTGGACAGAGTGCTTTGACGGATGCAAGAGACCATGTATATGAGATGAGTGAAAAGGAAGTAAACATCTTTTTCTAG 1836 42.16 MASTSLISLYCHPKNLLRPLPHKQRLRGHLLGCSSSGFYGAYGALVPVTVLVISSKRNLRFKSLIVKAAYGAEAGSRRSRRVYRESQAQSSSLMAPVKQVSSFVLPTGVFVAVTFVVWKLVEKLLIPKPEKPVESKPPADGMKWSFAAGTNLLSGLGAKVDRESKQKLNEFAKELRTFSSVDMSGRNFGDEGLIFLAQSLRYNQTVEEVNFSANGITAEGIKAFDGVLQSNIVLKTLNLSGNAIGDEGVKLLCEILVDNASIEHLHLNSTDFGDEGAKAVAEMMKKNASLRVLELNNNMIDYSGFTSLAGALLENNTIRNIHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGVRALMSGLSSHKGKVTLLDLGNNSITARGAFHVAEFVKKAKSLLWLNLYMNDIGDEGAGKIADALKQNRTIATIDLGGNNIHAKGVSDIAKVLKDNSVITTLELGYNPIGPDGAKALSEVLKFHGNIKTLKLGWCQIGPKGAEFIADTLKYNTTISVLDLRANGLRDEGAICLARSLKVVNEALTSLDLGFNEIRDDGAFAIAQALKTNEDVAVSSLNLASNFLTKFGQSALTDARDHVYEMSEKEVNIFF 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6372087 6377129 - Conep08aG0066500.1 Cone8ag0644 443193

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0644 611 Pfam Leucine Rich repeat 427 450 IPR001611 GO:0005515(InterPro)
Cone8ag0644 611 Pfam Leucine Rich repeat 406 422 IPR001611 GO:0005515(InterPro)
Cone8ag0644 611 Pfam Leucine Rich repeat 456 478 IPR001611 GO:0005515(InterPro)
Cone8ag0644 611 Pfam Leucine Rich repeat 542 563 IPR001611 GO:0005515(InterPro)
Cone8ag0644 611 Pfam Leucine Rich repeat 486 506 IPR001611 GO:0005515(InterPro)
Cone8ag0644 611 Pfam Leucine Rich repeat 511 534 IPR001611 GO:0005515(InterPro)
Cone8ag0644 611 Pfam Leucine Rich repeat 231 253 IPR001611 GO:0005515(InterPro)
Cone8ag0644 611 Pfam Leucine Rich repeat 202 224 IPR001611 GO:0005515(InterPro)
Cone8ag0644 611 Pfam Leucine Rich repeat 259 281 IPR001611 GO:0005515(InterPro)
Cone8ag0644 611 Pfam Leucine Rich repeat 343 365 IPR001611 GO:0005515(InterPro)
Cone8ag0644 611 SUPERFAMILY RNI-like 330 598 - -
Cone8ag0644 611 FunFam RNI-like superfamily protein 297 377 - -
Cone8ag0644 611 Gene3D Ribonuclease Inhibitor 314 483 IPR032675 -
Cone8ag0644 611 Gene3D Ribonuclease Inhibitor 156 313 IPR032675 -
Cone8ag0644 611 Gene3D Ribonuclease Inhibitor 484 607 IPR032675 -
Cone8ag0644 611 PANTHER YNEIN REGULATORY COMPLEX SUBUNIT 5 134 216 IPR052410 -
Cone8ag0644 611 SMART LRR_RI_2 203 230 - -
Cone8ag0644 611 SMART LRR_RI_2 541 568 - -
Cone8ag0644 611 SMART LRR_RI_2 400 427 - -
Cone8ag0644 611 SMART LRR_RI_2 428 455 - -
Cone8ag0644 611 SMART LRR_RI_2 512 539 - -
Cone8ag0644 611 SMART LRR_RI_2 287 314 - -
Cone8ag0644 611 SMART LRR_RI_2 484 511 - -
Cone8ag0644 611 SMART LRR_RI_2 175 202 - -
Cone8ag0644 611 SMART LRR_RI_2 372 399 - -
Cone8ag0644 611 SMART LRR_RI_2 343 370 - -
Cone8ag0644 611 SMART LRR_RI_2 259 286 - -
Cone8ag0644 611 SMART LRR_RI_2 231 258 - -
Cone8ag0644 611 SMART LRR_RI_2 456 483 - -
Cone8ag0644 611 SMART LRR_RI_2 315 342 - -
Cone8ag0644 611 SUPERFAMILY RNI-like 172 371 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0644 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g769 . . . . Bpe13g00481 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0644 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01684 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011878 1 3 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 28