Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0653 ATGGTGGAAGAAAATTGTTTACCGGCGAAAAGGTCTCGGGAAGAGGAAGAGAATGGCGTCTCCATGGAGACGGAGGGCAAGACAGAGCAGCCTGATGGAATTTCCGCTGTGATTCCTGGATGGTTCTCTGAGATAAGCCCAATGTGGCCTGGAGAAGCTCATTCTTTGAAGATAGAGAAGGTTTTATTTCAAGAGAAATCTGACTATCAGAAAGTTATGGTTTTTGAGTCATCAACCTATGGAAAGGTTCTTGTCTTGGATGGGGTCATTCAGCTTACAGAGAGAGATGAATGTGCCTACCAAGAAATGATCACTCATCTTCCACTCTGCTCAATTCCAAACCCAAAGAAGGTTTTGGTTATTGGTGGAGGAGATGGTGGAGTAATACGTGAGGTGTCTCGCCATCCTTCTGTGGAGCAGATAGATATCTGTGAGATTGATAAGATGGTTGTTGATGTTTCCAAACAGTTCTTCCCTGATGTAGCAGTTGGATTTGAGGATCCAAGGGTCACACTTCATATTGGTGATGGAGTTGCATTTCTGAAAGCTGTCCCAGAACATACTTATGATGCAGTTATAGTCGACTCTTCTGATCCAATTGGTCCTGCACAAGAGCTTTTTGAGAAGCCCTTTTTTGCGTCAGTAGCCAAGGCACTTCGGCCAGGAGGTGTTGTGTGCACTCAGGCTGAAAGCATTTGGCTTCATATGCACATTATTGAAGGCATTGTGGCAAATTGCCGTCAAATTTTCAAAGGCTCTGTCAACTATGCATGGACCACAGTTCCAACATATCCAAGTGGTGTTATCGGTTTTATGCTTTGCTCTACTGAGGGACCGGCTGTTGATTTCAAGCATCCAGTGAATCCAATAGATGGAAATGAGAGCTATGAGAAGCCTAGAAGACCCTTGAGATTTTACAACTCTGAGATCCATACAGCAGCATTTTGTTTGCCATCTTTTGCTAAGAAGGTCATTGAATCAAAAGCAAAGTGA 993 43.71 MVEENCLPAKRSREEEENGVSMETEGKTEQPDGISAVIPGWFSEISPMWPGEAHSLKIEKVLFQEKSDYQKVMVFESSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVIREVSRHPSVEQIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEHTYDAVIVDSSDPIGPAQELFEKPFFASVAKALRPGGVVCTQAESIWLHMHIIEGIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPAVDFKHPVNPIDGNESYEKPRRPLRFYNSEIHTAAFCLPSFAKKVIESKAK 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6497385 6500931 - Conep08aG0067600.1 Cone8ag0653 443202

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0653 330 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 118 131 IPR030373 -
Cone8ag0653 330 FunFam Spermidine synthase 1 92 330 - -
Cone8ag0653 330 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 39 276 IPR030374 -
Cone8ag0653 330 PIRSF Spermidine_synth 29 330 IPR030668 GO:0006595(InterPro)
Cone8ag0653 330 Pfam Spermidine synthase tetramerisation domain 40 94 IPR035246 -
Cone8ag0653 330 FunFam Spermidine synthase 1 32 91 - -
Cone8ag0653 330 Hamap Polyamine aminopropyltransferase [speE]. 40 326 IPR001045 GO:0003824(InterPro)
Cone8ag0653 330 CDD AdoMet_MTases 117 228 - -
Cone8ag0653 330 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 37 326 IPR029063 -
Cone8ag0653 330 PANTHER SPERMIDINE/SPERMINE SYNTHASE 34 328 IPR001045 GO:0003824(InterPro)
Cone8ag0653 330 NCBIfam spermidine synthase 41 320 IPR001045 GO:0003824(InterPro)
Cone8ag0653 330 Gene3D Spermidine synthase, tetramerisation domain 33 91 IPR037163 -
Cone8ag0653 330 Pfam Spermine/spermidine synthase domain 97 284 - -
Cone8ag0653 330 Gene3D Vaccinia Virus protein VP39 92 330 IPR029063 -
Cone8ag0653 330 MobiDBLite consensus disorder prediction 1 23 - -
Cone8ag0653 330 MobiDBLite consensus disorder prediction 1 30 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0653 K00797 - - rcu:8262009 561.222
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0965 Cone-Chr1:54859250 Cone8ag0653 Cone-Chr8:6497385 4.68E-144 dispersed
Cone2ag0896 Cone-Chr2:34809788 Cone8ag0653 Cone-Chr8:6497385 6.01E-37 dispersed
Cone13ag1032 Cone-Chr13:8585410 Cone8ag0653 Cone-Chr8:6497385 2.07E-191 wgd
Cone19ag1023 Cone-Chr19:7635600 Cone8ag0653 Cone-Chr8:6497385 7.73E-189 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g740 Blo01g00399 . Bda01g02226 . Bpe13g00491 Bpe10g00833 Bma14g01785 Bma15g00191 . Cmo18g00810 . Cma18g00807 . Car18g00739 . Cpe09g00497 Cpe01g01521 . . . . . . . Cla05g02529 Cam05g2719 Cec05g2750 Cco05g2791 Clacu05g2721 Cmu05g2575 Cre05g2689 Cone13ag1032 Cone19ag1023 Cone8ag0653 . Lsi04g00535 Csa05g02348 Chy10g00915 Cme10g00511 Blo06g00871 Blo11g00905 Bda07g01594 . . . Bma01g00055 . . . . Cma04g01719 . Car04g01751 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000582 4 4 3 5 5 3 5 3 3 3 3 3 4 3 3 5 3 3 4 3 3 6 2 4 4 3 3 4 3 2 106