Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0657 ATGGTTGCTCCTTCCTTCGACGGCGTGTATCAGGACCGGCGCTTATTGAAGCACGTTCATGATAACATTCACGGAAATATATATCTCGAACCGCTCTTTTTGAAGTTCATTGATACGGAACAATTTCAAAGACTTCGCTATCTAAGGCAACTTGGGTTCACGCACATGGTTTATCCTGGGGCTGTGCATTCCCGGTTTGAGCATTCATTAGGGGTGTATTGGCTGGCTGGTGAAGCTTTGAATACAATTAAAACTTATCAAGGTGCGGAGCTTGGTATTGAACGTAATGACCTAAAGACAGTCCGACTTGCAGGGCTCTTGCATGATGTCGGCCATGGACCATTCAGCCACTCATTTGAATGTGAATTTCTTCCTCGGGTCCTTAATGATTCTATCTGGTCTCATGAGGACATGTCTTTGAAGATGATAGACTACATTGTTGATGAGCATAACATTGAAATTGACTCCGAGATTCTGAAAAAAGCGAAGCAAATGATCATTGCTAGCCCAGAACATGATTCAAAAGCTAATGTAAAAGAGAAGAGGTTCCTGTATGATATTGTTGCAAATGCTCGAAATGGAATAGATGTTGACAAGTTTGATTACATTGCTCGTGACTCCAGGGCTTGTGGTGTAGGCTTCAACTTTCACTTTGAGAGGATTATGGAAACCATGCGAGTCATTGATGACGAGATATGTTATCGTGCCAAGGATTATCTAACAATCTACAAGATGTTTGCCAATCGTGCTGATCTGCATCGTACAGTCTATACCCATGCAAAAGTTAAGGCTATAGAACTGATGGTTGTGGATGCTCTGGTAAAAGCGAATGATTATCTTGGACTTGTGTCATCAGTTCATCAACCTGACGAATACTGGAAGCTGGATGACTCGATTCTGCGAACAATTGAAACTTCTTCCGCTGAAGAGCTGAAGCAAGCCAGAGACTTGATTTTACGCATTCGGAGAAGAGAGCTATACCAGTTCTGCAATGAGTTTTCAGTTCCAAAAGAAAACCTGGCCTACTTCAAAAAAGTCACTCCCCAAGATATCATTTGTGCTCAGAAAAGTGGAGGCGTTACATTAAAAGAAGAAGATGTTGCTGTCGGTAATTCCAAAATTGATTTGTCGAGGGGAAGGAATAACCCTCTTGAAAGGATACATTTTTTCCAGGATTTTGAAAGCAATGAGAAATTTCCAATCCAAGACGATCGCATCAGTAACCTGCTGCCTGCCGGTTATCAGGACTGGATAGTGAGAGTGTACTCCAAGAAACCTGAATTGGTGGAAGCGGTATCGGAGGCGTTCGAGAATTTTCAGCTGAAAATGTATGGGATGAAAACGCAGGTTCATGCAACTCCCGAGAAGAAGTGTAGAGCCATAAGGTATTAA 1392 42.31 MVAPSFDGVYQDRRLLKHVHDNIHGNIYLEPLFLKFIDTEQFQRLRYLRQLGFTHMVYPGAVHSRFEHSLGVYWLAGEALNTIKTYQGAELGIERNDLKTVRLAGLLHDVGHGPFSHSFECEFLPRVLNDSIWSHEDMSLKMIDYIVDEHNIEIDSEILKKAKQMIIASPEHDSKANVKEKRFLYDIVANARNGIDVDKFDYIARDSRACGVGFNFHFERIMETMRVIDDEICYRAKDYLTIYKMFANRADLHRTVYTHAKVKAIELMVVDALVKANDYLGLVSSVHQPDEYWKLDDSILRTIETSSAEELKQARDLILRIRRRELYQFCNEFSVPKENLAYFKKVTPQDIICAQKSGGVTLKEEDVAVGNSKIDLSRGRNNPLERIHFFQDFESNEKFPIQDDRISNLLPAGYQDWIVRVYSKKPELVEAVSEAFENFQLKMYGMKTQVHATPEKKCRAIRY 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6539519 6544506 - Conep08aG0068000.1 Cone8ag0657 443206

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0657 463 Gene3D - 326 446 - -
Cone8ag0657 463 SMART hd_13 61 212 IPR003607 -
Cone8ag0657 463 Pfam HD domain 65 163 IPR006674 -
Cone8ag0657 463 FunFam Metal-dependent phosphohydrolase HD domain-containing protein 326 446 - -
Cone8ag0657 463 SUPERFAMILY HD-domain/PDEase-like 11 449 - -
Cone8ag0657 463 CDD HDc 63 222 IPR003607 -
Cone8ag0657 463 PANTHER DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE 12 457 IPR050135 GO:0005634(PANTHER)|GO:0006203(PANTHER)|GO:0008832(PANTHER)
Cone8ag0657 463 Gene3D Hypothetical protein af1432 15 325 - -
Cone8ag0657 463 ProSiteProfiles HD domain profile. 65 203 IPR006674 -
Cone8ag0657 463 FunFam Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 15 325 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0657 K22544 - - vvi:100267261 707.212
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0119 Cone-Chr11:534755 Cone8ag0657 Cone-Chr8:6539519 3.92E-237 wgd
Cone18ag1360 Cone-Chr18:9344689 Cone8ag0657 Cone-Chr8:6539519 1.69E-245 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g727 . . . . Bpe13g00494 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0657 . . . . . . . . . . . Bma01g00053 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007842 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 2 1 2 36