Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0658 ATGGAGATAGGTTGCGTCTGGATGAGGCGTCTCCTCTTCGTCGGAAATACCTCTCCGCCCTTTCGCCCTAAGCCTTTCGCGGCTTCCTCCATTGTCACTCTTTCTCGTCATCCAATCTCCGGCCCTTCTCTCCCACTCACGCCGCTCAATCTCATTTATTTTCCCTCTTCTGGGCGTCGTTGGCTTTCAGCAGCTTCTTGCTCCTCAGCAATTCCTCTTGTTGCGCTCGAACTTCCTCCTGATTTTGGAGGTGTTGAGTGCACGGGAAGCTCAAAGGATGATAAGAAGGTGCTTTTAAAGGGAATGACTTACACTGAGGTTGAGAAATGGGTTCAATCACGCGGATACAGACCTGGTCAAGCTTTAATGCTGTGGAAACGTCTTTACGGAAACAATATGTGGGCTCATAATTGTGAAGAATTAGAAGGTTTGAACAAAGATTTTAAGAGAATGTTGAGTGAAAGTGTTGAATTCAAGGCATTATCTTTGAGGGAAATTGTCACAGCATCTGATGGAACTAGGAAGATTCTGTTTAATTTGGAAGATGCGTTGGTAATAGAAACAGTTGTCATACCTTGTGATAGAGGTAGAACAACTGTGTGTGTTTCAAGCCAAGTGGGTTGTGCCATGAATTGTCAATTCTGCTACACTGGCAGGATGGGTTTAAAGAGAAATCTGACTGCTGCTGAGATAGTAGAGCAAGCTGTGTTTGCGCGACGCTTGCTAACTAGTGAAGTTGGTTCTATCACTAATGTTGTGTTCATGGGAATGGGAGAGCCGCTTCACAATGTTGACAATGTCATCAAAGCTGCTGACATCATGGTCCATGACCAGGGCCTTCATTTCAGTCCTCGTAAGGTCACTATTTCAACCAGTGGACTTGTTCCTCAGCTGAAACGTTTCCTCCGAGAATCCAACTGTGCTTTAGCTGTTAGCCTGAATGCAACAACTGATGAGGTTAGAAACTGGATCATGCCTATCAACCGGAAGTACAAGTTGGGGTTTCTTCTTCAGACCCTGAGGGAGGAACTCCAATCAAAGCATAACTACAAAGTGTTTTTCGAGTATGTCATGCTTGCCGGTGTTAATGACAGCATTGAGGATGCAAAGAGGCTTGTAGATCTTGTTCGGGAAATCCCATGCAAGATCAATCTCATTTCCTTCAATCCTCATTCTGGATCTAAATTTAGACCTACCAGTGAGGAGAAGATGATCGAGTTTAGGAATCTCCTGGCTGAAGCAGGTTGCACTGTTTTCTTGAGGCTCAGTCGAGGTGATGACCGGATGGCTGCTTGTGGTCAGCTAGGAAATCCTGGTATTGTTCGAGCCCCCTTACTACGCATACCGGATAAATTCCAAACAGCTATGGAAATGTCTGCTTGA 1383 45.26 MEIGCVWMRRLLFVGNTSPPFRPKPFAASSIVTLSRHPISGPSLPLTPLNLIYFPSSGRRWLSAASCSSAIPLVALELPPDFGGVECTGSSKDDKKVLLKGMTYTEVEKWVQSRGYRPGQALMLWKRLYGNNMWAHNCEELEGLNKDFKRMLSESVEFKALSLREIVTASDGTRKILFNLEDALVIETVVIPCDRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRNLTAAEIVEQAVFARRLLTSEVGSITNVVFMGMGEPLHNVDNVIKAADIMVHDQGLHFSPRKVTISTSGLVPQLKRFLRESNCALAVSLNATTDEVRNWIMPINRKYKLGFLLQTLREELQSKHNYKVFFEYVMLAGVNDSIEDAKRLVDLVREIPCKINLISFNPHSGSKFRPTSEEKMIEFRNLLAEAGCTVFLRLSRGDDRMAACGQLGNPGIVRAPLLRIPDKFQTAMEMSA 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6546136 6549414 - Conep08aG0068100.1 Cone8ag0658 443207

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0658 460 ProSiteProfiles Radical SAM core domain profile. 194 427 IPR007197 GO:0003824(InterPro)|GO:0051536(InterPro)
Cone8ag0658 460 SFLD Radical SAM 93 436 IPR007197 GO:0003824(InterPro)|GO:0051536(InterPro)
Cone8ag0658 460 FunFam Dual-specificity RNA methyltransferase RlmN 161 440 - -
Cone8ag0658 460 PANTHER 23S RRNA METHYLTRANSFERASE 88 439 IPR040072 GO:0030488(PANTHER)|GO:0070475(PANTHER)
Cone8ag0658 460 SUPERFAMILY Radical SAM enzymes 196 414 - -
Cone8ag0658 460 Gene3D Aldolase class I 161 440 IPR013785 -
Cone8ag0658 460 SFLD adenosine C2 methyltransferase (RlmN-like) 93 436 IPR004383 GO:0006364(InterPro)|GO:0008173(InterPro)
Cone8ag0658 460 NCBIfam 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 95 435 IPR027492 GO:0030488(InterPro)|GO:0070475(InterPro)
Cone8ag0658 460 Pfam Radical SAM superfamily 203 372 IPR007197 GO:0003824(InterPro)|GO:0051536(InterPro)
Cone8ag0658 460 CDD Radical_SAM 207 407 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0658 K06941 - - mdm:108173010 662.914
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1045 Cone-Chr12:8715994 Cone8ag0658 Cone-Chr8:6546136 1.38E-43 dispersed
Cone5ag0263 Cone-Chr5:1120120 Cone8ag0658 Cone-Chr8:6546136 1.98E-52 dispersed
Cone8ag0658 Cone-Chr8:6546136 Cone8ag1078 Cone-Chr8:9743970 1.45E-50 dispersed
Cone8ag0658 Cone-Chr8:6546136 Cone1ag1278 Cone-Chr1:56220633 1.86E-56 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g724 . . Bda01g02224 . Bpe13g00495 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0658 . . . . . . . . . . . Bma01g00052 . . . . . Cma05g00005 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011256 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 28