Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0677 ATGGAATCGAAGAGATTTGCATTTACTGAGCAGTTTCAGTTTCTTCCATGGAGGAGAAAAGTGGGTTCTGGTTTTTATTTAGGGGTTGGAATTTCTCTCACTGTTCTTCTCATTTTACTCTTCTTCAACACCTCTTTAATTTTTTCTTTCTCTTCTACACATAAATCTCTTTTCTCTCACTCTCATGGAAATGTGAATGGAGTAAATAATTTATTTGTTTCTTGGCCTTTCTTGTTCTCCTCTTCTCTTTCTAATAATTCCTCTGTCGGTTTGAACAAAACCCAGAAAGCAAATGTGTCTGGTTTTGATAAAAATGTAGGATTTAATGGATCAAGGGTTGGTGATGAGAAGGGGAAAATTTTGGATTTTAATGAAGAAGAAGGAGGAAAAGGAAATATTGTGGTTTTAGAGAAGAGTTATATGGGCAATTTCCCTGAGGGTAAAAGTGGGAATTCGAGTCTTGATAGTTTAGGAAAGTTAGATGCAAAGGCAGAGATTGATCATGAAGATCAACTTTCACAGAATATTTCTAGTGTAAATGAAAGCAATTATGATTTTGATGAGGAAAAATGTGATATATTTGATGGTAGATGGGTGAGAGATGATTCAAAACCTTATTATGATAAAGGGTCTTGTCCTTATATTGATAAGGATTTTGATTGTTTTCTAAATAAAAGACCAGATGATGAGTTTGTGAAGTGGAGATGGCAGCCTAATGGGTGTGATATTCCAAGTTTGAATGCAACTGATTTTCTCGAGCGATTGAGAGGGAAGAAGTTGGTTTTTGTGGGCGATTCACTAAATAGGAACATGTGGGAGTCTCTAGTGTGCATTCTCCGCCATAGTATCAAGGACAAGAAAACAGTATTCGAGATTTCTGGAAGGACAGAATTTAAGAAGAAGGGCTTTTACGCATTCAGATTTGAGGACTATAATTGTACCGTGGATTTTGTCGGTTCCCCATTTCTAGTTAGGGAATCATCCTTTAATGGTAGAAATGGATCGTTTGAGACATTGAGATTGGATTTAATGGATCGAACTACTTCAATGTATTATGATGCTGATATTGTAGTCTTCAATACGGGCCACTGGTGGACCCATGAGAAAACATCCAGAGGACTATTATCAAGAAGGCAACTATGTGCACCCAAGGCTAAAAGTGTTGGAAGCATATAA 1176 36.65 MESKRFAFTEQFQFLPWRRKVGSGFYLGVGISLTVLLILLFFNTSLIFSFSSTHKSLFSHSHGNVNGVNNLFVSWPFLFSSSLSNNSSVGLNKTQKANVSGFDKNVGFNGSRVGDEKGKILDFNEEEGGKGNIVVLEKSYMGNFPEGKSGNSSLDSLGKLDAKAEIDHEDQLSQNISSVNESNYDFDEEKCDIFDGRWVRDDSKPYYDKGSCPYIDKDFDCFLNKRPDDEFVKWRWQPNGCDIPSLNATDFLERLRGKKLVFVGDSLNRNMWESLVCILRHSIKDKKTVFEISGRTEFKKKGFYAFRFEDYNCTVDFVGSPFLVRESSFNGRNGSFETLRLDLMDRTTSMYYDADIVVFNTGHWWTHEKTSRGLLSRRQLCAPKAKSVGSI 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6759164 6762387 + Conep08aG0070000.1 Cone8ag0677 443226

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0677 391 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 243 370 IPR026057 GO:0016740(InterPro)
Cone8ag0677 391 Pfam PMR5 N terminal Domain 189 242 IPR025846 -
Cone8ag0677 391 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 46 369 IPR029962 GO:0005794(PANTHER)|GO:0016413(InterPro)|GO:0016413(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0677 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0677 Cone-Chr8:6759164 Cone8ag1541 Cone-Chr8:11573090 1.16E-41 dispersed
Cone8ag0677 Cone-Chr8:6759164 Cone13ag0522 Cone-Chr13:5518063 1.46E-76 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g660 . Blo16g01164 . Bda11g01277 Bpe13g01475 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0677 . . . . . . . . Bda11g01277 . . Bma01g00560 Bma06g00610 . . . . Cma05g00029 . Car05g00024 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012948 0 1 0 1 0 1 1 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 0 2 1 2 28