Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0708 ATGACGTCACCCGGACTGTCGTCGGAGCTCCTCTCGGCGTCCGGTCGGAGCTCCGAGAAGTTGAGTCTGCCGTCGCTACAGTCGAAGATGAAGTGCGATCCAGAAGGTTACGACTCCGAGCTCTTGCTCATCTACAGCCAATTCAAGTCTTCTCTAGACCTCTTTGAACAGCAAGCCGCCCTTAATTTCACCTCCATCAGTGGTATCGGTAATGATCCCTCTGTAGCCAAAGACCTCGGTGATAGGGCTTTGTTCTTGGCCCACGTTGCTCCATTCTACCCCAAGCATCTTGCCGAATTCCCCAACCAGCTGGCTGAATTGCTCCGCTCGTCTTCAAGGTCTTTGCCTTCTGGATTGAGGTGCCATATAGTGCAGGCTCTCATTCTACTGATCAATAGAAAGATGGTTGACATTGGAGAGCATCTTGCATTGTTCCTGGAGCTACAGACTTTGGGCGATAGGGCTTTACAGAAATTGGCATTCTCTCATGTTGTTCATGGCATTAGAAGGATGAATAAAAAGCATAAGAATGAAGTAAAAAATCGGGCACTTCAAAAAATTTTGTTTGCTATGCTACAGGAAAAGGATGAAGCAAAAGCCAAGAGATCATTTATGACAGTATACGATCTTCATAGGAGAAAGGTCTGGTTTGATGATAGAACAGCAAATGCAATCTGTACTGCATGCTTTCATGACTCATCAAGGATTATGATTGCTGCTCTGTCAGTTCTTCTTGACTATGAGAAGATTGAAGATGGTGATGATAGTGATGCTTCAGATACCGAGGATGAATTGACTACTCCTACACCTCAAGTTGTCATTAATAAGGAAGCTATTTATAAGGCACATCACAAAGGTACAGTTTCTAGCAAGAAGAAAAAGAAAGCAAAACTGCAACGTGCTATGCGTAGCATGAAAAGGCAGCAACGCTTATCATCAGAGAAAAATTCATCTAATTACTATTCACCTCTTAACCAACTAAAAGATCCACAGGGATTTGCTGAAAAGCTATTCTCTAGACTTCAAGCCTGCAATGAGCGATTTGAGGTTAAGATGATGATGCTGAAAGTAATTTCTAGAACTGTTGGCCTCCACCACTTGATTTTGTTAAATTTCTATCCGTTTCTTCAAAAATATGTTCAGCCCCATCAACGCGATATCACAAGCTTGCTTGCAGCAGCAGTTCAAGCCTGCCATGAAATGGTTCCACCTGATGCAGTTGAACCTTTGTTCAAGCAGATAGTAAATCAATTTGTACATGATCGTTCACGTACCGAGGCCATTGCAGTGGGACTGAATGTTGTAAGGGAGATATGTTTGCGTATTCCTTTGTTGATGACAGAAGAGTTGCTGCAAGATCTTGCATTGTACAAGAAATCACATGAGAAGGCAGTTTCAATAGCAGCACGTTCGCTTATTGGCTTATTTAGAGAGCTTTTCCCCTCGCTGCTGATTAAAAAAGACCGTGGACGCCCAACTGATCCAAAGGCGAGGCCCAAAGCATTTGGAGCTGTCAGTGTAGCAAGTGATGTTCCTGATGTAGAGCTATTACTAGAGGATAGTGATGATGAGAATGATGAAGCTGATGGGCCCAGATCCGGTGGCTCTGATAAAGATGATGATGAGATGGCTTCTGTTAGTGATGACGGAGAAAGTCAGGTATTTAGTGATGATAGTGGAGGTGAAGAAGAAGATGAAATTGATGAAGATGAAAATAACAGTTCTGAGGATGATTGTGATGATAAGGAGGGTGGGACAGAGGTTGATGAAGAGGAGGAAGATGACGAGGAGAAATCTGAGGAAGATGGTGGTTCCGATAAGGATGATGAAAGTGAGTTGAGAGATAGTAGGACTAAAGATTGTATTGGGAAAAAGAGGAAGTTTCCTGATTTTGAAGAAAAACTTCTTGCTGCTGATACAAGCCTAAGGGCTTTGAAGAAATTGGCAGGAGAAACAATGGAGCATGCTTCATCAGATACAGCAGATGGCATTCTCTCTAATGAAGACTTTCAAAGAATCAAGGAACTAAAGGTGAAGAAAGAAGCGAAATCTGCTTTGGCTCAGCATGGGTTGTTGAAGAAGGCCTCAGCTGGAAAGTCCACACCATTTAAGATTCCAAGTTCTGATCAGTTAACTACTAAGCGATTGGATCCCTCCAAGCTTGATGCTCATGTAAGAAAGAAGATGAGCAAGGAGGAGAGGTTGCAATTAGTGAGAGCAGGGAGGGAGGACAGAGGGAAGTACCAAGCTCGGGCTGCTGTTAAACAGAAGAAGACTGGAGGTTTGAGCAATAAGCAGAAGGAACACAAGAAGGCAATGCCGATGGCAGCTAAGAGAGCTAAAGTCGCGAAATCACGAGTCGATAAAAGGATAAAGCAGCAGCGATCTGGCAAACAGTTCCGTGGAAAGAAAGCCTGGAAGTGA 2424 43.56 MTSPGLSSELLSASGRSSEKLSLPSLQSKMKCDPEGYDSELLLIYSQFKSSLDLFEQQAALNFTSISGIGNDPSVAKDLGDRALFLAHVAPFYPKHLAEFPNQLAELLRSSSRSLPSGLRCHIVQALILLINRKMVDIGEHLALFLELQTLGDRALQKLAFSHVVHGIRRMNKKHKNEVKNRALQKILFAMLQEKDEAKAKRSFMTVYDLHRRKVWFDDRTANAICTACFHDSSRIMIAALSVLLDYEKIEDGDDSDASDTEDELTTPTPQVVINKEAIYKAHHKGTVSSKKKKKAKLQRAMRSMKRQQRLSSEKNSSNYYSPLNQLKDPQGFAEKLFSRLQACNERFEVKMMMLKVISRTVGLHHLILLNFYPFLQKYVQPHQRDITSLLAAAVQACHEMVPPDAVEPLFKQIVNQFVHDRSRTEAIAVGLNVVREICLRIPLLMTEELLQDLALYKKSHEKAVSIAARSLIGLFRELFPSLLIKKDRGRPTDPKARPKAFGAVSVASDVPDVELLLEDSDDENDEADGPRSGGSDKDDDEMASVSDDGESQVFSDDSGGEEEDEIDEDENNSSEDDCDDKEGGTEVDEEEEDDEEKSEEDGGSDKDDESELRDSRTKDCIGKKRKFPDFEEKLLAADTSLRALKKLAGETMEHASSDTADGILSNEDFQRIKELKVKKEAKSALAQHGLLKKASAGKSTPFKIPSSDQLTTKRLDPSKLDAHVRKKMSKEERLQLVRAGREDRGKYQARAAVKQKKTGGLSNKQKEHKKAMPMAAKRAKVAKSRVDKRIKQQRSGKQFRGKKAWK 807
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7107798 7112879 + Conep08aG0073100.1 Cone8ag0708 443257

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0708 807 Coils Coil 288 311 - -
Cone8ag0708 807 MobiDBLite consensus disorder prediction 285 304 - -
Cone8ag0708 807 PANTHER HSDA/SDA1-RELATED 11 798 IPR027312 GO:0000055(PANTHER)|GO:0000055(InterPro)|GO:0005730(PANTHER)|GO:0042273(InterPro)|GO:0042273(PANTHER)
Cone8ag0708 807 MobiDBLite consensus disorder prediction 715 751 - -
Cone8ag0708 807 Pfam SDA1, C-terminal 760 805 IPR048292 -
Cone8ag0708 807 MobiDBLite consensus disorder prediction 761 775 - -
Cone8ag0708 807 MobiDBLite consensus disorder prediction 284 324 - -
Cone8ag0708 807 Pfam SDA1, HEAT repeat 85 460 IPR012977 -
Cone8ag0708 807 MobiDBLite consensus disorder prediction 693 807 - -
Cone8ag0708 807 SUPERFAMILY ARM repeat 84 501 IPR016024 -
Cone8ag0708 807 MobiDBLite consensus disorder prediction 518 622 - -
Cone8ag0708 807 MobiDBLite consensus disorder prediction 555 608 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0708 K14856 - - vvi:100252440 1043.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0686 Cone-Chr12:6263536 Cone8ag0708 Cone-Chr8:7107798 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g596 Blo01g00379 . Bda01g02201 . Bpe13g00513 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0708 Cone12ag0686 . . . . . . . . . . Bma01g00031 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007839 1 3 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 35