Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0710 ATGCCTTTTCTATTCTCAACCTTCACTTCCTCTTCACCAGTTCAAGACCCAGAAGTTGTAGTCCAAGAAGTACTTCAGAGCATCAATGGGTCTGGAAGGCAATTGGGCTATCTATCATGTGGCAATGGGAACCCCATTGATGAATGTTGGAGGTGTGACCCCAACTGGGAAAAGAACCGCAGAAGGTTAGCGAATTGTGCAATAGGGTTTGGCAAAAACGCGGTTGGAGGCAGGGACGGAAAGTTCTACGTGGTCACAGACCTGTCTGATAACGACCCCGTTAACCCCAAACGCGGCACTCTTAGGCATGCAGTGATCCAAGATGAACCCCTTTGGATCATCTTCAAACGTGACATGGTCATCAAGCTAAAAGCTGAGCTTATAATGAACTCATTCAAGACCATCGATGGACGAGGAGCCCAAGTACACATTGCTGGAGGGCCGTGCATTACTATACAATATGTGACGAATATTATCATTCATGGAATCAATATACATGATTGCAAACGAGGGGGGAATACTTATGTTAGAGATTCTCCAAATCATTTTGGGTGGAGGACTCTATCAGATGGAGATGGGATTTCAGTTTTTGGGGGAAGCCATATTTGGATTGATCATTGTTCTCTTTCTCGGTGCCGCGATGGTTTGATCGATGTGATTCATGGATCTTCGGCTATTACAATTTCTAATAATTACATGACACAGCATGATAAAGTGATGCTTTTGGGTCATAGTGATACTTATAAAGCTGATAAGCGTATGCAAGTTACTATCGCTTTCAACCATTTTGGAGAAGGGCTTGTGCAAAGGATGCCAAGATGTAGATTTGGGTATTTTCATGTGGTGAATAATGACTACACCCATTGGAAGATGTATGCAATTGGTGGTAGTGCATCTCCTACAATCAATAGTCAAGGCAATAAATTTCTTGCTCCCAATATTGGATCGGCAAAAGAGGTAACAAAACACGAGACGCAAGGGAATGAATGGAAGAAATGGAACTGGAGATCACAAGGAGATTTGATGTTGAATGGGGCATTCTTTACCCAATCTGGGGCTAGTACAACATCTTCTGCCTTCGCAAAGGCAATGAGCCTAAGCGCAAGACCATCTAACTGGGTGGGTTCAATCACTGCCGGGGCAGGTGTTCTTAAATGCAAAAAGGGTTCAGCTTGCTCATGA 1182 43.74 MPFLFSTFTSSSPVQDPEVVVQEVLQSINGSGRQLGYLSCGNGNPIDECWRCDPNWEKNRRRLANCAIGFGKNAVGGRDGKFYVVTDLSDNDPVNPKRGTLRHAVIQDEPLWIIFKRDMVIKLKAELIMNSFKTIDGRGAQVHIAGGPCITIQYVTNIIIHGINIHDCKRGGNTYVRDSPNHFGWRTLSDGDGISVFGGSHIWIDHCSLSRCRDGLIDVIHGSSAITISNNYMTQHDKVMLLGHSDTYKADKRMQVTIAFNHFGEGLVQRMPRCRFGYFHVVNNDYTHWKMYAIGGSASPTINSQGNKFLAPNIGSAKEVTKHETQGNEWKKWNWRSQGDLMLNGAFFTQSGASTTSSAFAKAMSLSARPSNWVGSITAGAGVLKCKKGSACS 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7123264 7124696 - Conep08aG0073300.1 Cone8ag0710 443259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0710 393 SUPERFAMILY Pectin lyase-like 29 386 IPR011050 -
Cone8ag0710 393 PRINTS Pollen allergen Amb family signature 90 115 IPR018082 -
Cone8ag0710 393 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Cone8ag0710 393 PRINTS Pollen allergen Amb family signature 66 83 IPR018082 -
Cone8ag0710 393 PRINTS Pollen allergen Amb family signature 126 142 IPR018082 -
Cone8ag0710 393 PRINTS Pollen allergen Amb family signature 270 289 IPR018082 -
Cone8ag0710 393 PRINTS Pollen allergen Amb family signature 190 211 IPR018082 -
Cone8ag0710 393 PRINTS Pollen allergen Amb family signature 363 386 IPR018082 -
Cone8ag0710 393 PRINTS Pollen allergen Amb family signature 333 357 IPR018082 -
Cone8ag0710 393 Pfam Pectate lyase 128 309 IPR002022 -
Cone8ag0710 393 FunFam Pectate lyase 43 385 - -
Cone8ag0710 393 SMART amb_all 118 315 IPR002022 -
Cone8ag0710 393 Gene3D - 43 385 IPR012334 -
Cone8ag0710 393 PANTHER PECTATE LYASE 18-RELATED 14 389 IPR045032 GO:0030570(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0495 Cone-Chr1:4834236 Cone8ag0710 Cone-Chr8:7123264 3.02E-58 dispersed
Cone2ag0944 Cone-Chr2:35120894 Cone8ag0710 Cone-Chr8:7123264 1.75E-232 dispersed
Cone4ag0383 Cone-Chr4:1736681 Cone8ag0710 Cone-Chr8:7123264 4.99E-202 dispersed
Cone7ag0370 Cone-Chr7:1620380 Cone8ag0710 Cone-Chr8:7123264 1.75E-202 dispersed
Cone8ag0710 Cone-Chr8:7123264 Cone8ag0841 Cone-Chr8:8427211 3.66E-90 dispersed
Cone9ag1106 Cone-Chr9:7088960 Cone8ag0710 Cone-Chr8:7123264 2.96E-144 transposed
Cone12ag0688 Cone-Chr12:6283813 Cone8ag0710 Cone-Chr8:7123264 1.14E-286 wgd
Cone13ag0192 Cone-Chr13:1209138 Cone8ag0710 Cone-Chr8:7123264 3.11E-222 wgd
Cone16ag0056 Cone-Chr16:296641 Cone8ag0710 Cone-Chr8:7123264 6.19E-227 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0710 K01728 - rcu:8285451 650.973