Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0716 ATGGAAAATGGGTTTTCTTCTCCGCGACACGACGCCTTTCCGGCTGGTCTTCGTGTTCTTGTCGTTGATGATGACCCGACTTGGCTTAAAATCCTCGAAAAGATGCTCAAGAGGTGTTCTTACGAAGTGACTACTTGTGGATTGGCAATAGAGGCTTTGAGATTACTCCGTGAGCGCAAAGAGGGATATGACATCGTGATCAGTGATGTCAACATGCCCGACATGGACGGTTTCAAACTTCTTGAACATGTCGGACTCGAAATGGATCTTCCCGTCATCATGATGTCAGTTGATGGAGAAACAAGTCGGGTAATGAAAGGGGTCCAACATGGAGCTTGTGATTATCTTCTCAAGCCGATAAGAATGAAAGAACTACGCAACATTTGGCAGCATGTGTTTCGGAAAAAGATTCATGAGATAAGAGACATAGAAGGCCATGATGGGTTTGAAGGAGTCATCACTATGAGTGGTGGATCGGATCAGTATGATGATGGGCAGTTTTTCCTAGGAGGAGAAGATTTAAGTTCATTGAAGAAACGGAGAGATTTTGATAAGCATGATGATAGCAAGGATTTTGGTGATACCTCTTCCATGAAAAAAACTAGAGTCGTATGGTCTGTTGACCTTCATCAGAAATTCGTGAAAGCTGTTGATCAAATCGGGTTCGACAAGGTTGGACCCAAGAAAATACTTGATTTGATGAATGTGCCGTGGTTGACAAGAGAAAATGTTGCTAGTCACTTGCAGAAGTACCGGCTCTATTGGAGTAGGCTTCAGAAAGAAAACAATCAAAATACTCCTTTTGTCGGAATTAAGAATACTGATTTAACTTCAAAAGATCCTTCTAAAAACCTTGGCCTCCAAAACATGCAAAAGAGTGATGTTACACATGGCAGCTTCGGATTTTCTGGAAATGACTTCCTTCTTCAGAGTCTTGATCCGAATCTGAAAAGCATAGTTTCAGAGGCTACATCAGAGCTGAAAAGGTCCTCAACCGGGAATATTCCGGATCCTAAGAAGAGGAGAAATTCTCACATGAAATCTAACCAACCTTTTCCATCATCTTCATCATCATCAGTGGAATCTGAAGTAAGCTTTTCAGGTTTAGATCCAAAAAGCATCCAAACCAGGTACCTTTGGAACCAACCTCCGAAAGTTCAATTCAAACAAGAAAACAACTTAAGCAGCCTCCCCCCCAAAGATCTGCCACCTCACATCCATGCTAACCAACTCCAACCGATTTCATCCTTTAGTACCCTACCTTCTGGAACCGAGAAAAAAGACATATCTACCCCCATCGAATTCCGACCAAAAACGGGAATCGAGCCCATTTCTGATCCGGCATGTGGGTTTCCCTTTGGATCATGGGATTGGCTTCAAGATGATTTTCATACCAAGTATCAAGGACATCAGAATAATGTAGAATTTCCAGAATGTCTTGATCCGGGGCTAATCACGGAAGTTCCATTTCACCTGTATGAGGCACTGAGGCTTGGCTATGAATATTCCTATGACCCGACTGAGTATTCAGTTATAGACGAGGGTTTGTTCATAGCATGA 1560 42.56 MENGFSSPRHDAFPAGLRVLVVDDDPTWLKILEKMLKRCSYEVTTCGLAIEALRLLRERKEGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEIRDIEGHDGFEGVITMSGGSDQYDDGQFFLGGEDLSSLKKRRDFDKHDDSKDFGDTSSMKKTRVVWSVDLHQKFVKAVDQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYWSRLQKENNQNTPFVGIKNTDLTSKDPSKNLGLQNMQKSDVTHGSFGFSGNDFLLQSLDPNLKSIVSEATSELKRSSTGNIPDPKKRRNSHMKSNQPFPSSSSSSVESEVSFSGLDPKSIQTRYLWNQPPKVQFKQENNLSSLPPKDLPPHIHANQLQPISSFSTLPSGTEKKDISTPIEFRPKTGIEPISDPACGFPFGSWDWLQDDFHTKYQGHQNNVEFPECLDPGLITEVPFHLYEALRLGYEYSYDPTEYSVIDEGLFIA 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7215291 7218834 + Conep08aG0073900.1 Cone8ag0716 443265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0716 519 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160(InterPro)
Cone8ag0716 519 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 303 IPR045279 GO:0009736(InterPro)
Cone8ag0716 519 SMART REC_2 17 129 IPR001789 GO:0000160(InterPro)
Cone8ag0716 519 FunFam Two-component response regulator 196 259 - -
Cone8ag0716 519 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160(InterPro)
Cone8ag0716 519 Gene3D - 17 150 - -
Cone8ag0716 519 Gene3D - 197 259 - -
Cone8ag0716 519 FunFam Two-component response regulator 17 166 - -
Cone8ag0716 519 NCBIfam myb-like DNA-binding domain, SHAQKYF class 200 253 IPR006447 GO:0003677(InterPro)
Cone8ag0716 519 MobiDBLite consensus disorder prediction 323 364 - -
Cone8ag0716 519 Pfam Myb-like DNA-binding domain 202 252 IPR001005 -
Cone8ag0716 519 MobiDBLite consensus disorder prediction 347 364 - -
Cone8ag0716 519 CDD REC_typeB_ARR-like 19 133 - -
Cone8ag0716 519 SUPERFAMILY Homeodomain-like 198 257 IPR009057 -
Cone8ag0716 519 SUPERFAMILY CheY-like 16 137 IPR011006 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0611 Cone-Chr4:2810489 Cone8ag0716 Cone-Chr8:7215291 3.25E-82 dispersed
Cone5ag0728 Cone-Chr5:3135786 Cone8ag0716 Cone-Chr8:7215291 2.22E-21 dispersed
Cone7ag0579 Cone-Chr7:2779087 Cone8ag0716 Cone-Chr8:7215291 3.16E-81 dispersed
Cone7ag1672 Cone-Chr7:11219297 Cone8ag0716 Cone-Chr8:7215291 6.91E-87 dispersed
Cone8ag0716 Cone-Chr8:7215291 Cone8ag1607 Cone-Chr8:11908305 3.33E-08 dispersed
Cone13ag1108 Cone-Chr13:8915265 Cone8ag0716 Cone-Chr8:7215291 9.92E-133 wgd
Cone19ag1096 Cone-Chr19:7950857 Cone8ag0716 Cone-Chr8:7215291 3.67E-138 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46671 PF00574 CLP_protease 3.20E-70 CL0127 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0716 K14491 - csv:101204370 591.267