Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone8ag0717 | ATGGAAACTCCTTTACCACAGTCTGTCATGAGCTTCCCACTGTTAGTCTCTTTGATCGTTACCATTTTCTTCTTCTTCATTTTCTCGAGAAAATGGAATGATTCTAACCACAGAAAAACTCCTACTTCACCAAAATTACCACCATCTCCACCTTTAAAGCTGCCCGTAATCGGCCACCTCCACTATCTCCTCACCGACATGCCCCACCACTCGTTCACCCAACTCGCTCACAAACTCGGTCCCATAATCTATCTCCAACTCGGTCAAGTACCCACAATCGTCATCAACTCAGCTCAACTCGCCAAACTCGTTCTCAAAACTCACGACCAAATCTTCTCAACTCGGCCCCAACTCCTAGCCGCAAAGTACCTCTCATTCAACTGCTCCGACGTCACTTTTTCCCCCTACGGCCCCTACTGGCGCCAAGTCAGAAAAATCTGCGTCGCAGAGTTGCTCAGCTCAAAACGAGTCAACTCGTTTCAACTCATCCGCGACCAGGAGATGACTCGGTTGCTGAGTTATGTGTCCGAGTCGGCCAAGTCCCGGTCAGAGATTGACATGAGTAGTCTCTTTTTCACGTTAGCTAATGACGTGTTATGTAGAGTGGCGTTCGGAAAGAGGTTCACGGTAAATACTAATGAATGGGGACCAAAACGCCATCGTTTAGTGGACGTTTTGACTGAAACGCAAGCTCTGCTAGCAGGGTTTTGCGTAGGGGATTTCTTTCCAAAATGGGAGTGGGTTAATTTGGTGAGTGGGTATAGAAGAAGGCTGGAGAAGAATTTAGAGGATTTGAGAGCTGTTTGTGATGAGATAATTGAAGAACATGTTAACACAAGAAAGAGGGAACTAGTTGTTGGTAGTGGGGAAGATTTCGTTGATGTTTTGCTTAGGGTTCAAAAGAGAGAGGATTTGGAGGTGCCCATTTCTGATGATAATCTCAAAGCTCTTGTTCTGGACATGTTTGTGGCTGGAACTGATACAACAGCAGCAACACTGGAGTGGGTAATGACAGAGCTAGTCAGACACCCAAAGGCAATGAAAAAGGCACAAGAAGAAGTTCGAAAAATCGCTTCCAGCAAAGGAAAAGTCCTCGAAGAAATTCATCTTCACCATCTTCACTACATAAAATCCGTTATCAAAGAAACAGTACGACTGCACCCACCAGTTCCTCTACTCGTCCCTAGAGAATCAATGAAGAAATGCATCCTTGACATCTATGAAATACCCGAAAAGACTCGGGTTTTGATCAATAGCTACGCGATAGGAAGAGACGAAGCGTCATGGGAGAATCCATTACAGTTCAGTCCCGAGAGGTTTGAGGTTGAGAAGATTGAAGTCAAAGATCAAGATTTTAAGTTCTTACCATTTGGAGGAGGAAGGAGAGGATGTCCTGGTTATTCTTTTGGCTTAGCAACGGTTGAGATTGCTCTAGCTCGGCTATTGTATCACTTTGATTGGAGCTTACCAAAAGGAGTAGATGTTGATGATGTTGATCTTGGTGAGATTTTTGGTCTTGCTACTAGAAAGGGGACTCCACTTATCCTTTTTGCAACGGAGAATAAAGAATATGCGCCAAAGAGAGATGCTAATTGA | 1596 | 44.55 | METPLPQSVMSFPLLVSLIVTIFFFFIFSRKWNDSNHRKTPTSPKLPPSPPLKLPVIGHLHYLLTDMPHHSFTQLAHKLGPIIYLQLGQVPTIVINSAQLAKLVLKTHDQIFSTRPQLLAAKYLSFNCSDVTFSPYGPYWRQVRKICVAELLSSKRVNSFQLIRDQEMTRLLSYVSESAKSRSEIDMSSLFFTLANDVLCRVAFGKRFTVNTNEWGPKRHRLVDVLTETQALLAGFCVGDFFPKWEWVNLVSGYRRRLEKNLEDLRAVCDEIIEEHVNTRKRELVVGSGEDFVDVLLRVQKREDLEVPISDDNLKALVLDMFVAGTDTTAATLEWVMTELVRHPKAMKKAQEEVRKIASSKGKVLEEIHLHHLHYIKSVIKETVRLHPPVPLLVPRESMKKCILDIYEIPEKTRVLINSYAIGRDEASWENPLQFSPERFEVEKIEVKDQDFKFLPFGGGRRGCPGYSFGLATVEIALARLLYHFDWSLPKGVDVDDVDLGEIFGLATRKGTPLILFATENKEYAPKRDAN | 531 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 7219501 | 7224554 | - | Conep08aG0074000.1 | Cone8ag0717 | 443266 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone8ag0717 | 531 | Coils | Coil | 255 | 275 | - | - | |
| Cone8ag0717 | 531 | PRINTS | P450 superfamily signature | 378 | 389 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cone8ag0717 | 531 | PRINTS | P450 superfamily signature | 455 | 464 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cone8ag0717 | 531 | PRINTS | P450 superfamily signature | 324 | 341 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cone8ag0717 | 531 | FunFam | Cytochrome P450 99A2 | 36 | 519 | - | - | |
| Cone8ag0717 | 531 | Gene3D | Cytochrome P450 | 32 | 519 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cone8ag0717 | 531 | Pfam | Cytochrome P450 | 48 | 509 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cone8ag0717 | 531 | CDD | CYP71-like | 78 | 514 | - | - | |
| Cone8ag0717 | 531 | PRINTS | E-class P450 group I signature | 418 | 442 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cone8ag0717 | 531 | PRINTS | E-class P450 group I signature | 333 | 359 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cone8ag0717 | 531 | PRINTS | E-class P450 group I signature | 100 | 121 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cone8ag0717 | 531 | PRINTS | E-class P450 group I signature | 377 | 395 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cone8ag0717 | 531 | PRINTS | E-class P450 group I signature | 454 | 464 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cone8ag0717 | 531 | PRINTS | E-class P450 group I signature | 76 | 95 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cone8ag0717 | 531 | PRINTS | E-class P450 group I signature | 313 | 330 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cone8ag0717 | 531 | PRINTS | E-class P450 group I signature | 194 | 212 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cone8ag0717 | 531 | PRINTS | E-class P450 group I signature | 464 | 487 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cone8ag0717 | 531 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 457 | 466 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cone8ag0717 | 531 | PANTHER | TRYPTAMINE 5-HYDROXYLASE | 17 | 529 | - | - | |
| Cone8ag0717 | 531 | SUPERFAMILY | Cytochrome P450 | 47 | 517 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone8ag0717 | K24541 | - | - | rcu:8278471 | 676.396 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone2ag0555 | Cone-Chr2:3128428 | Cone8ag0717 | Cone-Chr8:7219501 | 1.65E-122 | dispersed | |
| Cone2ag0556 | Cone-Chr2:3146952 | Cone8ag0717 | Cone-Chr8:7219501 | 1.81E-130 | dispersed | |
| Cone3ag1289 | Cone-Chr3:31724547 | Cone8ag0717 | Cone-Chr8:7219501 | 1.36E-105 | dispersed | |
| Cone8ag0717 | Cone-Chr8:7219501 | Cone9ag1520 | Cone-Chr9:11094177 | 1.56E-109 | dispersed | |
| Cone8ag0717 | Cone-Chr8:7219501 | Cone16ag0062 | Cone-Chr16:324590 | 5.59E-152 | transposed |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi1g1126 | . | . | Bda01g01726 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cone8ag0717 | . | . | . | . | . | . | . | . | . | . | . | . | Bma06g00585 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0002472 | 0 | 1 | 0 | 1 | 0 | 4 | 0 | 3 | 2 | 3 | 3 | 4 | 0 | 3 | 2 | 0 | 4 | 4 | 0 | 3 | 5 | 3 | 2 | 2 | 1 | 3 | 1 | 2 | 1 | 1 | 58 |