Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0719 ATGATCAAGCAGATACTAAAGAAGCTTCCTCGGAAATCATCTAAGAACGCTGATAATTATGAACATGGAGGAAACCATACGGTTTATTCCAAGCCATATGCCTCTTCTGGTTCGAAAACCGGGGAATTAGGGACTGGTAAAAAGGCCGGAGGGACTTTGGCCAAATCATTCCCATCAACCAATCCGGTTATAGATGTAGTGCAAAATAATGGTAGCAAGGTGAATTCAAAGGCTAATGGAAATCTTGCTATGTTATCTTCTTATGAGGCATTGCCTGCATTTAGGGATGTTCCTAGCTCAGAGAAGCAGAACTTGTTTATTAGAAAGCTGAGCTTGTGCTGTGTTGTATTTGATTTTAATGACCCGACTAAGCACATGAAAGAGAAGGAGATCAAGAGGCAAACATTGTTAGAGCTTGTTGATTACGTGAGCTCTGTGAGTAGTAAATTCCCTGAAAGTGTTATCCAAGAAGTTATCAAAATGGTGTCTGTGAATATATTTAGGACATTTAATCCTCAACCACGAGAGAACAAAGTATTGGAAGGTTTTGATTTGGAAGAGGAGGAGCCTTCGATGGACCCTTCATGGCCTCATTTGCAAATTGTGTATGAATTCTTTTTAAGGTTCGTTGCATCTCCAGAAATGGATGCAAAATTGTCCAAAAGGTATATTGATCACTCCTTCATTCTTAAATTGCTAGAACTTTTCGACTCAGAAGATCCCAGGGAAAGAGAATACTTGAAAACAATTCTCCATCGGATTTATGGAAAGTTTATGGTGCACCGCCCGTTTATCAGGAAAGCCATAAATAACATATTTTATCGGTTTATTTTCGAGACAGAAAAGCATAATGGGGTTGCTGAGCTTTTGGAAATTCTTGGAAGTATCGTAAATGGGTTTGCTCTGCCTTTGAAAGAAGAACATAAATTGTTCCTTGTCCGGGCATTAATCCCTTTGCACAAACCGAAATGCTTAGGAATGTACCACCAACAATTGTCTTATTGCATCACACAATTTGTTGAGAAAGATTGCAAGCTCGCTGATACTGTTATAAGGGGTTTACTGAAGTACTGGCCCATTACAAATAGCTCAAAAGAAGTGACGTTCATTGGTGAATTGGAGGAAGTATTGGAAGCAACTCAACCCCCTGAGTTTCAGCGTTGCATGGGTCCCTTGTTCTGCCAAATTGCTCGGTGTTTAAATAGCTCCCATTTTCAGGTTGCTGAACGGGCTTTATTCTTGTGGAACAATGATCACATTGAAAACTTGATCAAACAAAATCGTCAAGTCATCCTTCCCATTATCTTCCCTGCCTTAGAGAGGAATGCTCGGGATCATTGGAATCAAGCTGTTCATGGCCTGACTGTAAATGTCCGGAAGGTTTTCCGCGATCTTGATCCCGAGCTGTTCAATGAATGCTTGCTTGTGTTTCAAGAAAACGAATTGAAGGAAGATGAGATTAAAGCAAAGCGTGAAAATACATGGAAACGGTTAGAAGAAATCGCTGCGAAGAATGCTGCAACTAATGAAAGCCGTGCTTGTTCCTCCAAAAATACCCGATGGACCCCTTCAAGCTAA 1578 40.49 MIKQILKKLPRKSSKNADNYEHGGNHTVYSKPYASSGSKTGELGTGKKAGGTLAKSFPSTNPVIDVVQNNGSKVNSKANGNLAMLSSYEALPAFRDVPSSEKQNLFIRKLSLCCVVFDFNDPTKHMKEKEIKRQTLLELVDYVSSVSSKFPESVIQEVIKMVSVNIFRTFNPQPRENKVLEGFDLEEEEPSMDPSWPHLQIVYEFFLRFVASPEMDAKLSKRYIDHSFILKLLELFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGVAELLEILGSIVNGFALPLKEEHKLFLVRALIPLHKPKCLGMYHQQLSYCITQFVEKDCKLADTVIRGLLKYWPITNSSKEVTFIGELEEVLEATQPPEFQRCMGPLFCQIARCLNSSHFQVAERALFLWNNDHIENLIKQNRQVILPIIFPALERNARDHWNQAVHGLTVNVRKVFRDLDPELFNECLLVFQENELKEDEIKAKRENTWKRLEEIAAKNAATNESRACSSKNTRWTPSS 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7250529 7254812 - Conep08aG0074200.1 Cone8ag0719 443268

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0719 525 PIRSF PP2A_B56 1 524 IPR002554 GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro)
Cone8ag0719 525 SUPERFAMILY ARM repeat 103 484 IPR016024 -
Cone8ag0719 525 MobiDBLite consensus disorder prediction 1 54 - -
Cone8ag0719 525 FunFam Serine/threonine protein phosphatase 2A regulatory subunit 98 501 - -
Cone8ag0719 525 Gene3D - 98 501 IPR011989 -
Cone8ag0719 525 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 506 IPR002554 GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro)
Cone8ag0719 525 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 91 502 IPR002554 GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0719 K11584 - - csv:101203485 838.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1118 Cone-Chr13:8947508 Cone8ag0719 Cone-Chr8:7250529 1.45E-41 dispersed
Cone13ag1247 Cone-Chr13:9495717 Cone8ag0719 Cone-Chr8:7250529 3.81E-209 dispersed
Cone17ag1052 Cone-Chr17:7918775 Cone8ag0719 Cone-Chr8:7250529 8.74E-194 dispersed
Cone19ag1233 Cone-Chr19:8513074 Cone8ag0719 Cone-Chr8:7250529 2.27E-215 dispersed
Cone2ag0277 Cone-Chr2:1431767 Cone8ag0719 Cone-Chr8:7250529 2.87E-170 dispersed
Cone3ag0246 Cone-Chr3:1309279 Cone8ag0719 Cone-Chr8:7250529 9.96E-220 dispersed
Cone4ag1827 Cone-Chr4:13197253 Cone8ag0719 Cone-Chr8:7250529 5.44E-189 dispersed
Cone7ag1731 Cone-Chr7:11466390 Cone8ag0719 Cone-Chr8:7250529 8.87E-188 dispersed
Cone11ag0079 Cone-Chr11:340903 Cone8ag0719 Cone-Chr8:7250529 1.87E-256 wgd
Cone12ag0693 Cone-Chr12:6345149 Cone8ag0719 Cone-Chr8:7250529 6.54E-304 wgd
Cone13ag1117 Cone-Chr13:8946191 Cone8ag0719 Cone-Chr8:7250529 6.86E-79 wgd
Cone16ag0968 Cone-Chr16:9666961 Cone8ag0719 Cone-Chr8:7250529 1.03E-245 wgd
Cone18ag1398 Cone-Chr18:9537466 Cone8ag0719 Cone-Chr8:7250529 3.98E-258 wgd
Cone19ag1103 Cone-Chr19:7973234 Cone8ag0719 Cone-Chr8:7250529 2.60E-231 wgd
Cone2ag0069 Cone-Chr2:315975 Cone8ag0719 Cone-Chr8:7250529 1.24E-253 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1133 Blo01g00375 Blo16g01186 Bda01g02195 . Bpe13g00517 . . Bma15g00248 . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag1103 Cone8ag0719 . . . . . Blo06g00818 . . . . . Bma01g00027 Bma06g00582 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000671 5 4 6 5 5 2 4 2 2 2 2 2 3 2 2 4 2 8 3 2 2 4 2 2 2 2 2 9 5 3 100