Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0721 ATGGCTTTAAATTTTTCCCATTGGCCTATCTTCCCATCACATCTTTCTGAGGATTCTCTGGTTTCCTCGAGGATTTCCAGTGGATACCTTGTTGATGGTATCGCTGAGAGGAATGCTGATGAGTTTGGAAGGGGGTCATGGCATTCACACCCGGCAGTCCATGATTACTTTGATTATGGAAGGGATAGATGGGAGAGGGGTGGTTTGCAGGATTCTGTGCCCAATGACATTCTTGATCTTTTACCTTCTGATCCTTTTGGCATGGATATAAGTACCATCTCTACGGCAATCACTGGGTGGCTCGATGATCTGGAAGATGACTGTTGTGGGTATGGAAGAGATGGGGGTGTGGTTGGTGATGAGAATTGTCAGTTGTTTGCAAGATTGAATTATATCTTGAAAAATGCTATGAAGTTCCAGGACTTTTCTGGGAGTATGCCGTTTGTGCTTAAATCTGTTGTTGTGGGTGGATATGATATGTGTTTAGAGGAAGGGGATGTGTCCTTCCATGGTGGTGTTACACATGGGCCTGATTGTTCCATGGATGAGCTTCAGAATTTTGGCAGTGATATAAATTCCAGCACTTATGGGAAGCAATCTGAAGAATGTTCTGGTGTACATGGAGGACCTCCTCATGCTGCTTTACATTTTGCTAAGCTCCAGGAATTTTCTTGGAGTATCCCATTAGTGCATAAATCCACTGCTGTGTGCGGATACGATGTGTGTGTAGAGGAGAAGGGGGTGGGGGATGTGTCCTTCCATACTGGTCTTACACATAGATCTGATTGTTCCATGGATGAGGTTTATAATTTTTGCAGTGAAATAAATTCCAGCACTTCTGGGAAGCAATCTGAAGAATGTTCTGAAGCACACGGAGGAGCTCCTCATGCAGCTTTAAGTTTTGCTCTCTCTTATCTGAGTGTTCGGGATCTCCTTGTTGTTGGAGGAGTCTGTAGGTCTTTACGATCAATGGTGGGAGGGGACCCCTTGTTGTGGAGGAGTATCCATATTGATCAGCCGTTGAATGAGAAGATCACAGATGAGTTTCTAGTGCAATTGACTAATAAGGCTCAAGGTCACTTGCAATGCCTGAGCCTGGTTGAGTGCCAACGGATAACTGATGATGGTTTAAAGCGTGTGCTTGAAAATAATCCTAGATTAACCAAGCTATCCGTTCCTGGTTGTACACGACTCAGTATCGACAGTGTTGTGAGTAGCTTAAAGGCTCTCAAGCCAATGCGTAGACAAGGGGTGAAGCAGTTAAGGATAGGAGGTCTTTATGGTGTTACCCAACGGCATTTTAACGAATTGAAGGTCTTGTTGGGCACAGACCTCCCTACGCAAAAAAATGCCCACAAACCACATTTCTATTACAGAGGAAACTTTTATCTTTCTTGTGATGATGATCGTACTATTGATATCGAGACATGCCCAAGATGCCAGAATATTAGGCTCGTTTATGATTGCCCGGCAGAGACTTGTCAAGGGAAAAAGGAAGACAGAAGTCAGATATGCAGGGCATGTACAATTTGTATACGTAGGTGCATCCAATGTGGTAGGTGCATAAATGACTGTGAATATGAGGAAACGTTTTGTCTGGATTTACTCTGCTTTGATTGTTGGAGTCAGCAAGAGAAGGCTCAAGAGAGCGACGTTACAGAGGCTGGTTGTCCCTATGATGAGGAGTCATTTCTCACAGGGGAACAGGAATGTGGCTTATTTCGTCATGGCTAG 1734 44.18 MALNFSHWPIFPSHLSEDSLVSSRISSGYLVDGIAERNADEFGRGSWHSHPAVHDYFDYGRDRWERGGLQDSVPNDILDLLPSDPFGMDISTISTAITGWLDDLEDDCCGYGRDGGVVGDENCQLFARLNYILKNAMKFQDFSGSMPFVLKSVVVGGYDMCLEEGDVSFHGGVTHGPDCSMDELQNFGSDINSSTYGKQSEECSGVHGGPPHAALHFAKLQEFSWSIPLVHKSTAVCGYDVCVEEKGVGDVSFHTGLTHRSDCSMDEVYNFCSEINSSTSGKQSEECSEAHGGAPHAALSFALSYLSVRDLLVVGGVCRSLRSMVGGDPLLWRSIHIDQPLNEKITDEFLVQLTNKAQGHLQCLSLVECQRITDDGLKRVLENNPRLTKLSVPGCTRLSIDSVVSSLKALKPMRRQGVKQLRIGGLYGVTQRHFNELKVLLGTDLPTQKNAHKPHFYYRGNFYLSCDDDRTIDIETCPRCQNIRLVYDCPAETCQGKKEDRSQICRACTICIRRCIQCGRCINDCEYEETFCLDLLCFDCWSQQEKAQESDVTEAGCPYDEESFLTGEQECGLFRHG 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7269235 7272663 + Conep08aG0074400.1 Cone8ag0721 443270

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0721 577 PANTHER MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B 4 542 IPR050648 GO:0005737(PANTHER)
Cone8ag0721 577 SUPERFAMILY RNI-like 343 408 - -
Cone8ag0721 577 Pfam F-box-like 302 337 IPR001810 GO:0005515(InterPro)
Cone8ag0721 577 SUPERFAMILY F-box domain 298 335 IPR036047 GO:0005515(InterPro)
Cone8ag0721 577 Gene3D Ribonuclease Inhibitor 335 441 IPR032675 -
Cone8ag0721 577 Gene3D - 295 334 - -
Cone8ag0721 577 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 515 526 IPR017900 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0721 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0378 Cone-Chr6:1850890 Cone8ag0721 Cone-Chr8:7269235 6.09E-46 dispersed
Cone12ag0694 Cone-Chr12:6360650 Cone8ag0721 Cone-Chr8:7269235 3.22E-284 wgd
Cone13ag1120 Cone-Chr13:8955048 Cone8ag0721 Cone-Chr8:7269235 5.37E-139 wgd
Cone19ag1105 Cone-Chr19:7979938 Cone8ag0721 Cone-Chr8:7269235 1.77E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1136 . . Bda01g02193 . Bpe13g00519 . Bma14g01878 Bma15g00246 . Cmo18g00710 . Cma18g00723 . Car18g00669 Sed06g1724 Cpe09g00566 Cpe01g01595 Bhi07g01864 Tan04g0101 Cmetu10g0075 . Hepe10g0079 . . . . . . . . . Cone13ag1120 Cone19ag1105 Cone8ag0721 . Lsi04g00650 . . Cme10g00629 Blo06g00819 . . . . . Bma01g00025 . . . . Cma04g01812 . Car04g01824 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006614 1 1 0 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 0 1 1 2 1 2 37