Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0728 ATGCCTCCTCCTTCGTACTTCCCTCTTCGTTGGGAAAGCACAGGCGAGCAATGGTGGTACGCTTCACCAATCGACTGGGCAGCAGCAAACGGACTATACGACGTCGTTAGAGAGCTTCTCTTCATAGACAACAACCTCCTAATCAAGCTCACCTCTCTGCGCAGAATCCGCCGCCTAGAAACCGTTTGGGACGACGATTACAGTTTCAACGACGTTTCAAAATGCCGTTCTCTTGTCGCCAGAAATTTATTTCTCGAAGGCGAGAAGAAATCGGAAAAGGGTTCGATAAAAAAGAACTCTTTGATCAGAGCTGGCTACGGAGGTTGGCTTCTCTATACGGCTGCTTCGGCTGGGGATTTAGGGTTTGTGATGGAGTTGTTGGAGCGGGACCCACTTCTTGTTTTTGGAGAAGGGGAGTATGGTGTGAGTGATATTCTCTATGCTGCTGCAAGGAGTAGGAATTGTGAGGTTTTCAGGGTTTTGTTTGATTTGGGGATTTCCTCTTCTTCTGATAATAATGGTGGTGGAGGGGGAGAATTGGGTGATGTGGGTTTGAAGTTTAGGTGGGAGATGATGAACCGGGCTGTTCATGCGGCGGCTAGAGGCGGGAACTCGGAGATTCTGAGGGAGATTCTTGTGGATTCTTGTGATGTTTTGGGTTATAGAGATCTTGAGGGATCTACTGTTTTGCATTCTGCAGCTGGAAGAGGACAGCTTGAAGTAGTGAAGAATCTAGTAACATCATTTGACTACATAATCTCTTCCACAGATAATCAAGGGAACATGCCTCTGCATGTGGCCGCCTACAAAGGCTACTTGCCCGTGGTCGAATTCCTAATCCTGGCTGCTCCCTCCTTGACCTTGTTACCAAACAAATATGGAGACACTTTCCTTCACATGGCAGTTGCTGGTTTCCGGACTCCTGGTTTTCGAAGACTAGACCAGCAAATTGAGCTTGTGACCCACTTGGTCAATGGTAAGTCAACAAACATACATGACATCATCAATACCACAAATAACAACGGAAAAACTGCCCTTCATTTGGCCTTAAGCGAAAATGTTCAATCTAAATTAGTCGAACTCCTCCTAACCGTGTCTTCAATAAACTTAAACATCCGAGATTCGGATGGGTTGACCCCACTAGATCTCTTAAACCAACAGCCAAGATCAGCTGCTTTGGAAATTTTGATCAAACAGTTGATCTCAGCTGGGGGGATATTCTCCAATACTTGTGAAGATTGCTGTTATATGGAAAGGAATGCAAAAATGGAGGCGATCTTAAGTAGTCCAGGAACTTCGTTTAGAATACCAGATGGAGAAATATTATTATACACGGATCTCGATCGAACAAGTCGAGAATTCGAAAATTTCTCAAGCGATGAACTAAGTTCATTAGATTCAATGAACTCACCCGAACAAGAAAGAAAGAAACCCGGTTCTAAAAATTATGCGGCGAGGAGTCTAAAGTTGCTTCTCCAATGGGCCCAAAGGAAAGACAAGAAGAAACAGGCTAGCCAGGAACTGAGACTCAATGGTAGTCTGCTAGGCTCAGAGATGTTCGGTATGTATAGAGGAAGCCCGCTCCCGCTTAGAGAGAGATACTTGAAACCTCAGAATAATCATCCTAATAAGGAAATGATGTTATCAAAGAGCAGTCTTCTTCCAAGCCCATCAACTAAAAGGAAATATACGGCTGGATTAATGCAAGGTGTGATTCAGGCTGAGTTATCGTGTAAGCCTTATTCTTTTTCATCAAGCTGTTTAACGGATGATCTGAAGATTGTGTCTGATGGTGAAAAAGTGCCGGTAGGGAAGTACAAAGAAGAGTCATTTGATAGGAAGTTGATGAACAGGTACTTGTGTTTTGGTGCCCATGGTTTGGCTGGGGAAGCTGATTCGTTTGGGCCCAAGGAAAGATTGCAAGCATTTTAA 1932 44.36 MPPPSYFPLRWESTGEQWWYASPIDWAAANGLYDVVRELLFIDNNLLIKLTSLRRIRRLETVWDDDYSFNDVSKCRSLVARNLFLEGEKKSEKGSIKKNSLIRAGYGGWLLYTAASAGDLGFVMELLERDPLLVFGEGEYGVSDILYAAARSRNCEVFRVLFDLGISSSSDNNGGGGGELGDVGLKFRWEMMNRAVHAAARGGNSEILREILVDSCDVLGYRDLEGSTVLHSAAGRGQLEVVKNLVTSFDYIISSTDNQGNMPLHVAAYKGYLPVVEFLILAAPSLTLLPNKYGDTFLHMAVAGFRTPGFRRLDQQIELVTHLVNGKSTNIHDIINTTNNNGKTALHLALSENVQSKLVELLLTVSSINLNIRDSDGLTPLDLLNQQPRSAALEILIKQLISAGGIFSNTCEDCCYMERNAKMEAILSSPGTSFRIPDGEILLYTDLDRTSREFENFSSDELSSLDSMNSPEQERKKPGSKNYAARSLKLLLQWAQRKDKKKQASQELRLNGSLLGSEMFGMYRGSPLPLRERYLKPQNNHPNKEMMLSKSSLLPSPSTKRKYTAGLMQGVIQAELSCKPYSFSSSCLTDDLKIVSDGEKVPVGKYKEESFDRKLMNRYLCFGAHGLAGEADSFGPKERLQAF 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7309890 7312674 + Conep08aG0075200.1 Cone8ag0728 443277

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0728 643 MobiDBLite consensus disorder prediction 458 482 - -
Cone8ag0728 643 Gene3D - 13 429 IPR036770 -
Cone8ag0728 643 ProSiteProfiles Ankyrin repeat profile. 259 291 IPR002110 GO:0005515(InterPro)
Cone8ag0728 643 Pfam Ankyrin repeats (3 copies) 316 397 IPR002110 GO:0005515(InterPro)
Cone8ag0728 643 Pfam Ankyrin repeats (3 copies) 197 280 IPR002110 GO:0005515(InterPro)
Cone8ag0728 643 SUPERFAMILY Ankyrin repeat 111 398 IPR036770 -
Cone8ag0728 643 SMART ANK_2a 341 372 IPR002110 GO:0005515(InterPro)
Cone8ag0728 643 SMART ANK_2a 19 48 IPR002110 GO:0005515(InterPro)
Cone8ag0728 643 SMART ANK_2a 225 255 IPR002110 GO:0005515(InterPro)
Cone8ag0728 643 SMART ANK_2a 259 288 IPR002110 GO:0005515(InterPro)
Cone8ag0728 643 SMART ANK_2a 140 170 IPR002110 GO:0005515(InterPro)
Cone8ag0728 643 SMART ANK_2a 293 333 IPR002110 GO:0005515(InterPro)
Cone8ag0728 643 SMART ANK_2a 191 220 IPR002110 GO:0005515(InterPro)
Cone8ag0728 643 SMART ANK_2a 376 409 IPR002110 GO:0005515(InterPro)
Cone8ag0728 643 SMART ANK_2a 106 135 IPR002110 GO:0005515(InterPro)
Cone8ag0728 643 ProSiteProfiles Ankyrin repeat profile. 225 246 IPR002110 GO:0005515(InterPro)
Cone8ag0728 643 ProSiteProfiles Ankyrin repeat region circular profile. 259 280 - -
Cone8ag0728 643 ProSiteProfiles Ankyrin repeat profile. 341 363 IPR002110 GO:0005515(InterPro)
Cone8ag0728 643 ProSiteProfiles Ankyrin repeat region circular profile. 225 246 - -
Cone8ag0728 643 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 6 408 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0728 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0074 Cone-Chr11:326848 Cone8ag0728 Cone-Chr8:7309890 2.45E-85 wgd
Cone16ag0973 Cone-Chr16:9683548 Cone8ag0728 Cone-Chr8:7309890 4.65E-151 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1145 Blo01g00371 Blo16g01188 Bda01g02190 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0728 . . . . . . . . . . . . Bma06g00580 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009176 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 34