Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0733 ATGGAGGATTCCGATCAATGCATTGATCCCAAAAGCGGCTTCTCTGCAACAACGTCCGTCTTTCACAGCCTTAGACCTCAAATTCCACTCCCTCCTCCCACCACTCCGCTCTCCATCTCCGACTGCATTTTCTCTCTCCTCAAATCCCCTCCTCAGCCTCTCCTCACCGCTGCTTTAATTGACGCCACCACTAATCTCCGCGTTCCTTTCCATGACCTCATTCGCCGGGTCGAAACTCTCTCCTCCTTTCTCCAAACCATTACCGGCCTCTGTAAAGGTCACACCGCCCTAATCGTCTCCCCAAATTCACTTCACGTTCCTATTCTCTACCTCTCTCTGCTCTCCCTCGGCATCATCGTCACTCCTTCCAATCCAGCCTCCTCCGAACTAGAGCTCATACGCCATATCCATCTCTGCAAACCTGTAATCGCCTTCGTGACGTCTCAAACCGCTCGCAAAATCCCCTCGCTTCCGTTCGGCACTATCCTCCTCGATTCGACAGATTTCGAGACAATGATGACCAATCGCGTCGCGGATCTTCATCGAGCGACGATTAACCAGTCCGACACGGCGGCGATTTTGCTATCGTCTGGCACCTCAGGACGAGTCAAGGGAGTCGAGTTGACTCACTGGAACTGGATTTCAGTGCTAACCATATCCTGCGCGGCCCTTCGTGATGCTGCCCATGTGGCTACTTTCTGTACGGTTCCGTTCTTCCATGTCTATGGCTTCGCTCTGTGCCTGAGATCGGTGGCAATGGGACACACCATGGTTCTCATGGAGAGATTTGATATGAAGGTGATGATAAGATCGATCCAGGAATTTAGTGTCACACACGTGGCACTCGCTCCGCCGACCATCATGGCGTTAGTTAGTGATGGAAATGCAACGAACGGCTACGATTTGAGCTCCCTCCAAGTGGTCGCAAGCGGCGGAGCTGCTCTGCGGAAGTGTGTGATTCAGCGATTCCGGGACCGGTTTCCTAACGTCCAATTAGTTCAGACATATGGGCTGACAGAAACAACGGGCCGAGCTTTTGGGACAGTTGGGCCGGAAGAAAGCAGGGTAGTAGGTGCAACAGGGAGGCTTGCACCAAATCTGCAAGCAAAAATTGTTGACACGGAAACTGGAATGGGCCTGCCTCCGAACAAGACTGGAGAGCTTTGGATTAGAGGCCCAATAGTGATGAAAGGTTATATTGGTGACGAAGAAGCCACTATTCGAAGTATAGACTCGGAAAGATGGTTTAAAACAGGGGACTTGTGCTATATTGACAGCCGAGGATTCCTATTCTTTGTGGATAGACTGAAGGAATTGATCAAGTACAAAGCCTACCAGGTACCCCCAGCTGAATTGGAACATCTACTTCAGTCCCACCCAGATGTTGTAGAAGCAGCTGTAGCTCCGTACCCAGATGAGGAAGCGGGACAAATACCCATGGCCTTTGTGGTGAGAAGAAATGGGAGTGTGATTGACGACGTAGAAATCAAGGATTTCATTGCCAAGCAGGTTGCACCATATAAGAGAATAAGAAGGGTGATGTTTGTTGATTCCATACCCAAAAATGCACCGGGTAAGGTGTTGAGGAGAGAGTTGATTAAACTTGCATCATCAAATCCAACCTCCAAGTTGTAG 1635 50.15 MEDSDQCIDPKSGFSATTSVFHSLRPQIPLPPPTTPLSISDCIFSLLKSPPQPLLTAALIDATTNLRVPFHDLIRRVETLSSFLQTITGLCKGHTALIVSPNSLHVPILYLSLLSLGIIVTPSNPASSELELIRHIHLCKPVIAFVTSQTARKIPSLPFGTILLDSTDFETMMTNRVADLHRATINQSDTAAILLSSGTSGRVKGVELTHWNWISVLTISCAALRDAAHVATFCTVPFFHVYGFALCLRSVAMGHTMVLMERFDMKVMIRSIQEFSVTHVALAPPTIMALVSDGNATNGYDLSSLQVVASGGAALRKCVIQRFRDRFPNVQLVQTYGLTETTGRAFGTVGPEESRVVGATGRLAPNLQAKIVDTETGMGLPPNKTGELWIRGPIVMKGYIGDEEATIRSIDSERWFKTGDLCYIDSRGFLFFVDRLKELIKYKAYQVPPAELEHLLQSHPDVVEAAVAPYPDEEAGQIPMAFVVRRNGSVIDDVEIKDFIAKQVAPYKRIRRVMFVDSIPKNAPGKVLRRELIKLASSNPTSKL 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7361201 7367638 + Conep08aG0075700.1 Cone8ag0733 443282

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0733 544 Pfam AMP-binding enzyme 58 399 IPR000873 -
Cone8ag0733 544 Pfam AMP-binding enzyme C-terminal domain 451 526 IPR025110 -
Cone8ag0733 544 Gene3D - 438 540 IPR045851 -
Cone8ag0733 544 CDD 4CL 58 532 - -
Cone8ag0733 544 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 14 532 - GO:0016405(PANTHER)
Cone8ag0733 544 Gene3D - 31 437 IPR042099 -
Cone8ag0733 544 ProSitePatterns Putative AMP-binding domain signature. 193 204 IPR020845 -
Cone8ag0733 544 FunFam 4-coumarate--CoA ligase 2 438 539 - -
Cone8ag0733 544 SUPERFAMILY Acetyl-CoA synthetase-like 29 537 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0733 K01904 - - mdm:103425523 622.083
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag2006 Cone-Chr4:13992231 Cone8ag0733 Cone-Chr8:7361201 6.86E-151 dispersed
Cone8ag0512 Cone-Chr8:3651093 Cone8ag0733 Cone-Chr8:7361201 7.65E-110 dispersed
Cone17ag0161 Cone-Chr17:800063 Cone8ag0733 Cone-Chr8:7361201 1.84E-24 transposed
Cone12ag0705 Cone-Chr12:6485683 Cone8ag0733 Cone-Chr8:7361201 1.51E-167 wgd
Cone16ag0978 Cone-Chr16:9705980 Cone8ag0733 Cone-Chr8:7361201 1.82E-173 wgd
Cone16ag0032 Cone-Chr16:199550 Cone8ag0733 Cone-Chr8:7361201 4.87E-199 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1169 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0733 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002494 1 2 2 1 2 2 2 1 2 2 1 2 2 2 2 2 2 4 2 2 2 1 2 4 2 1 2 2 1 4 59