Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0740 ATGGACATTACTGAAATTGAAGAAAATCTATTTGCCGCAAGTGATGCCAAGTTACATGGAGAATTGTGCAAGGCGCTTTCTGCAATTTATTGCAAGGTGCTGTCAATTTTTCCGTCCTTGGAAGCGGCACTGCCTAGGAGCAAGTCAGGTATTCAGGCATTGTGCTCGTTACATGTAGCCCTTGAGAAGACCAAGAACATCCTTCAACATTGCTCAGCATGTAGCAAACTCTACTTGGCTATAACTGGGGATTCGGTCCTGTCAAAATTTGAGAAGGCTAGATGTGCTTTGGAAGATGGTCTTAGACGTGTGGAAGATATTGTTCCACAATCAATTGGATGCCAGATTCAAGAGATTATTTGTGAAGTTGAAGGCACCGTTTTTTCTCTCAATCCATTGGAGAAGCAAGTCGGTGATGACATTGTCGGACTTCTCCAACAAGGAAGAAAATTCAACAACTCTAATGACATCAATGAGCTCGAGTGTTTTCACCAAGCTGCCGTTAGACTTGGAATAACCTCCTCTAGAGTAGCCCTCACAGAAAGAAGAGCACTCAAGAAACACATAGAACGAGCTCGTGCTGAAGATGACAAACGGAAAGAATCAATTGTGGCTTACCTTTTGCATCTTATGAGGAAATACTCCAAGCTATTTAGAAGTGAACTATCAGATGACACTGATTCACAGGGGTCTACTCCCTGTTCACCCACAGTTCAGGGTACGCTTGAGGAATGCAGGCCCGGAGGAAATGGTCAAGCCCTTGAAAGGCAACTATCAAAGCTCAGTTCTTTTAATTTCAAGCCAAGTAATAGAAGATCCAGGCAGATGCCTCTCCCTCCCGAGGAATTAAGGTGCCCTATATCGTTGCAGCTTATGTATGATCCAGTGATTATAGGTTCGGGTCAAACATATGAAAGGACTTGCATTGAGAAATGGTTCTGTGATGGGCATAGCACTTGCCCAAAGACTAAACAGAATCTCTCTTATTTATGCTTAACGCCTAATTATTGTGTTAAGGGCCTTATTGCCAGCTGGTGTGAACAGAATGGATATCCTATCCCAGAGGGCCCCCCAGAAAGTCTTGACGTAAATTATTGGAGGCTTGCTTTATCTGAGTCTGATTCAGCAAACTCAAGATCTATGAACAGTGTAGGATCTTCTTACAAAGTGAAGGGAGTTAAGGTGGTCCCCTTAGAAGAGGAGTGTGGTATTATTGAAGAGCCCGAAGGAAATGAAGTGGATAGTATGTCAGCTTATGAGGAAGTAGAGTCTGATTTCAATATTTTCGAAAGATATGAAAATTTTCTAATGGTTTTGAATGGAGAAGAAGACATAAGGAACAAGTGTAAGGTGGTGGAGAAGATAAGGCTCTTGTTAAAGGATGATGATGAGGCCAGAATTTTCATGGGAGCTAATGGTTTTGCTGAAGCACTTTTGCAGTTTCTAGAATTAGCTGTGCATGAAGGGAACTCTGCAGCTCAGGAAAGTGGAGCTATGGCTCTCTTCAACCTTACTGTCAATAATAACAGAAACAAGGAAATGATGTTAGCAGCTGGTGTGATTTCGTTATTGGAAGCAATGACCTCAAATCCGAACTCGGCTGGATATGCTACAGCCCTATATCTAAACCTCTCCTGCCTTGATGAAGCTAAGCCTATAATTGGTTCAAGTCAAGCTGTTTTTTTCCTAACTGACATTCTTCAAACTAATCCAGAACCTCTCTGCAAGCAAGATGCTCTCCATGCCCTCTATAATCTCTCTACTTTACCCTCCAATATACCCAATCTACTCTCAGTTGGAATCATAAACGCTCTTCAACCCATTTTCACTAATCAAACTGACTACTCATGGACCGAAAAATCCATAGCTGTATTGATCAACTTGGCTTCTACCCAATCGGGTAGGGAAGAAATAGTCTCCTCCCCAATCCTTATTACTGCCCTTGCTGTGATATTGGATACAGGTGAACCGTTAGAGCAAGAGCAAGCCGTAACTTGTCTTTTGATTTTGTGCAAGGGGAATGAGAAGTGCTGCCAGATGGTATTAAGAGAAGGGGTGATTCCTGGATTGGTATCAATTTCTGTTGATGGGACTTTGAGAGGGAAAGAGAAGGCCCAAAAGCTTTTAATGGTGTTTAGAGAACAAAGGCAACGAGACCAATCGCCTACTGAATGGGCGGAAAATAGTGATAATCCTTTGCCGCCTGTATTGGAATCAAAGCCGCCCTGCAAGACGATTTCCAGAAAGAAAATGGGGAGAGCTTTGAGCTTTTTATGGAAGAGTAAGAGCTTTTCTGTTTATCAGTGTTAA 2310 42.42 MDITEIEENLFAASDAKLHGELCKALSAIYCKVLSIFPSLEAALPRSKSGIQALCSLHVALEKTKNILQHCSACSKLYLAITGDSVLSKFEKARCALEDGLRRVEDIVPQSIGCQIQEIICEVEGTVFSLNPLEKQVGDDIVGLLQQGRKFNNSNDINELECFHQAAVRLGITSSRVALTERRALKKHIERARAEDDKRKESIVAYLLHLMRKYSKLFRSELSDDTDSQGSTPCSPTVQGTLEECRPGGNGQALERQLSKLSSFNFKPSNRRSRQMPLPPEELRCPISLQLMYDPVIIGSGQTYERTCIEKWFCDGHSTCPKTKQNLSYLCLTPNYCVKGLIASWCEQNGYPIPEGPPESLDVNYWRLALSESDSANSRSMNSVGSSYKVKGVKVVPLEEECGIIEEPEGNEVDSMSAYEEVESDFNIFERYENFLMVLNGEEDIRNKCKVVEKIRLLLKDDDEARIFMGANGFAEALLQFLELAVHEGNSAAQESGAMALFNLTVNNNRNKEMMLAAGVISLLEAMTSNPNSAGYATALYLNLSCLDEAKPIIGSSQAVFFLTDILQTNPEPLCKQDALHALYNLSTLPSNIPNLLSVGIINALQPIFTNQTDYSWTEKSIAVLINLASTQSGREEIVSSPILITALAVILDTGEPLEQEQAVTCLLILCKGNEKCCQMVLREGVIPGLVSISVDGTLRGKEKAQKLLMVFREQRQRDQSPTEWAENSDNPLPPVLESKPPCKTISRKKMGRALSFLWKSKSFSVYQC 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7457912 7461713 - Conep08aG0076500.1 Cone8ag0740 443289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0740 769 FunFam RING-type E3 ubiquitin transferase 278 352 - -
Cone8ag0740 769 SUPERFAMILY RING/U-box 274 354 - -
Cone8ag0740 769 CDD RING-Ubox_PUB 280 332 IPR045210 -
Cone8ag0740 769 Gene3D - 414 726 IPR011989 -
Cone8ag0740 769 SUPERFAMILY ARM repeat 439 702 IPR016024 -
Cone8ag0740 769 MobiDBLite consensus disorder prediction 719 740 - -
Cone8ag0740 769 Pfam U-box domain 280 349 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone8ag0740 769 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Cone8ag0740 769 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone8ag0740 769 SMART Ubox_2 282 345 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone8ag0740 769 PANTHER U BOX DOMAIN-CONTAINING 22 717 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1424 Cone-Chr4:11355341 Cone8ag0740 Cone-Chr8:7457912 3.22E-15 dispersed
Cone6ag1628 Cone-Chr6:12536070 Cone8ag0740 Cone-Chr8:7457912 4.41E-82 dispersed
Cone7ag1513 Cone-Chr7:10538209 Cone8ag0740 Cone-Chr8:7457912 1.25E-16 dispersed
Cone7ag1670 Cone-Chr7:11205179 Cone8ag0740 Cone-Chr8:7457912 7.47E-23 dispersed
Cone8ag0740 Cone-Chr8:7457912 Cone9ag1553 Cone-Chr9:11266669 2.21E-88 dispersed
Cone12ag0712 Cone-Chr12:6553517 Cone8ag0740 Cone-Chr8:7457912 0 wgd
Cone13ag1136 Cone-Chr13:9000613 Cone8ag0740 Cone-Chr8:7457912 0 wgd
Cone19ag1117 Cone-Chr19:8027342 Cone8ag0740 Cone-Chr8:7457912 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0740 - - - 0.0