Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone8ag0780 | ATGGATGAACATAACTTGAATCATGGCGGCGATGAAGATGATGCGTCTGATGTTGAAAACTTGGACGGGAAGGAGATTCAGAGGTTATGGTCTCAGTTTTCCGACAAGAACTTCTCCTACTCTGAACCCCTTCTTCAGAGGAGGCTTAACACTACCTCTCAGATTGCCATTGTTGGTTCTAACCTCTGTTCTATAGAGAGCCTTGACTATGAGATTATTGAAAATGAATTATTTAAGCAGGACTGGAGGTCGAGGAAGAAAGTTCAGATATTTCAGTATGTTGTGCTCAAGTGGGCTTTTGCTCTTATTATCGGGCTTGGTACTGGATTGGTCGGCTTCTTCAATAATATTGCAGTCGAGAATATAGCCGGTTATAAGCTACTGCTGACTAGTGAATTGATGAACCAGGAAAAATATATCATGGCCTTTGTAGCATTTGCTGGTTGTAATGTAGTTTTAGCAGCTGCTGCTGCTGCTCTTTGTGCTTACATTGCTCCAGCAGCAGCAGGCTCTGGTATTCCTGAGGTAAAAGCCTATCTCAATGGCATTGATGCATATTCAATACTTGCACCAAGTACTCTCTTTGTCAAGATATTTGGTTCCATTCTTGGTGTTTCTGCTGGATTTGTGGTTGGTAAAGAAGGGCCAATGGTACACACAGGTGCTTGCATAGCCAATTTACTAGGACAGGGGGGTTCTCGTAAGTACCATTTGACATGGAAATGGCTTAGATACTTCAAAAATGACCGGGATAGGCGAGACATGATCACTTGTGGTGCTGCTGCTGGTGTAGCCGCTGCTTTTCGTGCTCCAGTTGGAGGTGTTCTTTTTGCCCTTGAAGAGGCTGCATCATGGTGGAGGAGTGCACTTCTTTGGAGGACCTTTTTCACAACAGCTGTGGTAGCTATAGTTTTAAGAGGTTTCATACAATTTTGTTCAACCGGAACATGTGGGCTATTTGGGGAAGGGGGTCTAATAATGTATGATGTTAGTTCATCAAGTTCAACATATAGCTGGTCCGATATATTGGCAGTGATAGTCTTAGGAATTATTGGCGGCATCCTTGGAAGCATATACAACTATCTAGTGGACAAGGTCATTCGTACTTACAGCTTTATAAATGAAAGAGGTGCAGCTTATAAAGTCTTGCTCGTTGTAGCAATCTCCTTATTGACATCATGTTGCTCATATGGCATCCCATGGCTAGCTAGCTGTCTGGCCTGCCCTACTGATGTCACAGTGAGTTGCCCTACTGTAGGCGAATCGGGAAACTACAAAAGCTTCCAGTGCCCATCCGGCTACTATAACGACCTTGCCTCCCTCTTTCTAAACACTAATGACGATGCCATCCGAAACCTTTTCAGCAGCAGTTCTGAAAAAACCTTCCAAATCTCAACTCTCCTCATTTTCTTTGCTGCTGTCTATGTCCTAGGAATCATCACCTATGGCATTGCTATCCCTTCAGGGCTTTTCATTCCTGTCATTCTAGCCGGAGCATGCTACGGCCGCCTAGTGGGTAGATTATTCGAGTCTATCTCTACTCTCGACACGGGGTTATTTGCCCTTCTTGGAGCTGCCTCCTTCCTTGGTGGGACCATGAGAATGACCGTTTCCTTATGCGTCATACTCCTTGAGCTCACTAATGACTTGCTTCTGCTTCCTCTTGTCATGTTGGTTCTTCTTATATCGAAAACTGTAGCTGATAGCTTCAATTCAGGTGTCTATGACCAAATATTGAAGATTAAGGGATTGCCTTATTTAGAGGCACATGCTGAACCCTACATGAGGCAGTTAGTAGCACGGGATGTTGTTGCGGGTCCCTTGGTGACATTTTCAGGCATTGAAAAAGTAGGGAATATACTCCATGCATTAAAGACTACAGGGCACAACGGTTTTCCAGTTGTTGATGAGCCGCCCTTTTCTGAAGGGCCCGAGTTATGCGGATTAGTTTTGAGGTCTCATTTACTTGTTTTGTTAAAAGGGAAGTCTTTTTTGACAGAAAGGGCTATAACGGGTGAAGAGATATTGCATCAGTTTGCCGTGTTTGATTTTGCCAAGGCAGGATCAGGGAAGGGAATCAAACTGGAGGATCTTGAATTAGATGAGGATGAGATGGAGATGTATGTGGATCTTCATCCCATTACGAATTCATCTCCTTACACAGTTGTAGAGACAATGTCATTAGCTAAAGCCAAGATTCTTTTCAGACAGCTTGGGCTCCGGCACATGTGCGTCGTTCCAAAGTGTCAAGGGAGGCCGCCTATTGTTGGGATTTTGACGAGGCATGACTTCATGCCGGAGCATGTTTTCGGTCTCTATCCTCATATCAAGCCTCACAAGTAG | 2343 | 44.26 | MDEHNLNHGGDEDDASDVENLDGKEIQRLWSQFSDKNFSYSEPLLQRRLNTTSQIAIVGSNLCSIESLDYEIIENELFKQDWRSRKKVQIFQYVVLKWAFALIIGLGTGLVGFFNNIAVENIAGYKLLLTSELMNQEKYIMAFVAFAGCNVVLAAAAAALCAYIAPAAAGSGIPEVKAYLNGIDAYSILAPSTLFVKIFGSILGVSAGFVVGKEGPMVHTGACIANLLGQGGSRKYHLTWKWLRYFKNDRDRRDMITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAIVLRGFIQFCSTGTCGLFGEGGLIMYDVSSSSSTYSWSDILAVIVLGIIGGILGSIYNYLVDKVIRTYSFINERGAAYKVLLVVAISLLTSCCSYGIPWLASCLACPTDVTVSCPTVGESGNYKSFQCPSGYYNDLASLFLNTNDDAIRNLFSSSSEKTFQISTLLIFFAAVYVLGIITYGIAIPSGLFIPVILAGACYGRLVGRLFESISTLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNDLLLLPLVMLVLLISKTVADSFNSGVYDQILKIKGLPYLEAHAEPYMRQLVARDVVAGPLVTFSGIEKVGNILHALKTTGHNGFPVVDEPPFSEGPELCGLVLRSHLLVLLKGKSFLTERAITGEEILHQFAVFDFAKAGSGKGIKLEDLELDEDEMEMYVDLHPITNSSPYTVVETMSLAKAKILFRQLGLRHMCVVPKCQGRPPIVGILTRHDFMPEHVFGLYPHIKPHK | 780 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 7787359 | 7792736 | - | Conep08aG0080600.1 | Cone8ag0780 | 443329 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone8ag0780 | 780 | PRINTS | Chloride channel signature | 518 | 534 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone8ag0780 | 780 | PRINTS | Chloride channel signature | 197 | 216 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone8ag0780 | 780 | PRINTS | Chloride channel signature | 486 | 506 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone8ag0780 | 780 | PRINTS | Chloride channel signature | 166 | 183 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone8ag0780 | 780 | PRINTS | Chloride channel signature | 261 | 280 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone8ag0780 | 780 | PRINTS | Chloride channel signature | 574 | 588 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone8ag0780 | 780 | PRINTS | Chloride channel signature | 536 | 555 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone8ag0780 | 780 | PRINTS | Plant CLC chloride channel signature | 71 | 79 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cone8ag0780 | 780 | PRINTS | Plant CLC chloride channel signature | 282 | 290 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cone8ag0780 | 780 | PRINTS | Plant CLC chloride channel signature | 438 | 454 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cone8ag0780 | 780 | PRINTS | Plant CLC chloride channel signature | 296 | 306 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cone8ag0780 | 780 | PRINTS | Plant CLC chloride channel signature | 314 | 321 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cone8ag0780 | 780 | Gene3D | Clc chloride channel | 89 | 587 | - | - | |
| Cone8ag0780 | 780 | ProSiteProfiles | CBS domain profile. | 714 | 778 | IPR000644 | - | |
| Cone8ag0780 | 780 | Gene3D | - | 588 | 770 | IPR046342 | - | |
| Cone8ag0780 | 780 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 600 | 767 | - | - | |
| Cone8ag0780 | 780 | Pfam | CBS domain | 715 | 765 | IPR000644 | - | |
| Cone8ag0780 | 780 | FunFam | Chloride channel ClC3 | 89 | 409 | - | - | |
| Cone8ag0780 | 780 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 48 | 768 | IPR051280 | GO:0009705(PANTHER)|GO:0015108(PANTHER)|GO:0043231(PANTHER) | |
| Cone8ag0780 | 780 | Pfam | Voltage gated chloride channel | 154 | 568 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone8ag0780 | 780 | SUPERFAMILY | CBS-domain pair | 591 | 765 | IPR046342 | - | |
| Cone8ag0780 | 780 | SUPERFAMILY | Clc chloride channel | 75 | 590 | IPR014743 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone14ag0840 | Cone-Chr14:5213351 | Cone8ag0780 | Cone-Chr8:7787359 | 3.97E-225 | dispersed | |
| Cone16ag0837 | Cone-Chr16:9007941 | Cone8ag0780 | Cone-Chr8:7787359 | 0 | dispersed | |
| Cone16ag0988 | Cone-Chr16:9739563 | Cone8ag0780 | Cone-Chr8:7787359 | 4.46E-77 | dispersed | |
| Cone2ag0049 | Cone-Chr2:247321 | Cone8ag0780 | Cone-Chr8:7787359 | 5.38E-276 | dispersed | |
| Cone2ag0205 | Cone-Chr2:1082670 | Cone8ag0780 | Cone-Chr8:7787359 | 0 | dispersed | |
| Cone3ag0892 | Cone-Chr3:4599137 | Cone8ag0780 | Cone-Chr8:7787359 | 0 | dispersed | |
| Cone12ag0789 | Cone-Chr12:7236184 | Cone8ag0780 | Cone-Chr8:7787359 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone8ag0780 | K05016 | - | vvi:100259734 | 1193.72 |