Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0780 ATGGATGAACATAACTTGAATCATGGCGGCGATGAAGATGATGCGTCTGATGTTGAAAACTTGGACGGGAAGGAGATTCAGAGGTTATGGTCTCAGTTTTCCGACAAGAACTTCTCCTACTCTGAACCCCTTCTTCAGAGGAGGCTTAACACTACCTCTCAGATTGCCATTGTTGGTTCTAACCTCTGTTCTATAGAGAGCCTTGACTATGAGATTATTGAAAATGAATTATTTAAGCAGGACTGGAGGTCGAGGAAGAAAGTTCAGATATTTCAGTATGTTGTGCTCAAGTGGGCTTTTGCTCTTATTATCGGGCTTGGTACTGGATTGGTCGGCTTCTTCAATAATATTGCAGTCGAGAATATAGCCGGTTATAAGCTACTGCTGACTAGTGAATTGATGAACCAGGAAAAATATATCATGGCCTTTGTAGCATTTGCTGGTTGTAATGTAGTTTTAGCAGCTGCTGCTGCTGCTCTTTGTGCTTACATTGCTCCAGCAGCAGCAGGCTCTGGTATTCCTGAGGTAAAAGCCTATCTCAATGGCATTGATGCATATTCAATACTTGCACCAAGTACTCTCTTTGTCAAGATATTTGGTTCCATTCTTGGTGTTTCTGCTGGATTTGTGGTTGGTAAAGAAGGGCCAATGGTACACACAGGTGCTTGCATAGCCAATTTACTAGGACAGGGGGGTTCTCGTAAGTACCATTTGACATGGAAATGGCTTAGATACTTCAAAAATGACCGGGATAGGCGAGACATGATCACTTGTGGTGCTGCTGCTGGTGTAGCCGCTGCTTTTCGTGCTCCAGTTGGAGGTGTTCTTTTTGCCCTTGAAGAGGCTGCATCATGGTGGAGGAGTGCACTTCTTTGGAGGACCTTTTTCACAACAGCTGTGGTAGCTATAGTTTTAAGAGGTTTCATACAATTTTGTTCAACCGGAACATGTGGGCTATTTGGGGAAGGGGGTCTAATAATGTATGATGTTAGTTCATCAAGTTCAACATATAGCTGGTCCGATATATTGGCAGTGATAGTCTTAGGAATTATTGGCGGCATCCTTGGAAGCATATACAACTATCTAGTGGACAAGGTCATTCGTACTTACAGCTTTATAAATGAAAGAGGTGCAGCTTATAAAGTCTTGCTCGTTGTAGCAATCTCCTTATTGACATCATGTTGCTCATATGGCATCCCATGGCTAGCTAGCTGTCTGGCCTGCCCTACTGATGTCACAGTGAGTTGCCCTACTGTAGGCGAATCGGGAAACTACAAAAGCTTCCAGTGCCCATCCGGCTACTATAACGACCTTGCCTCCCTCTTTCTAAACACTAATGACGATGCCATCCGAAACCTTTTCAGCAGCAGTTCTGAAAAAACCTTCCAAATCTCAACTCTCCTCATTTTCTTTGCTGCTGTCTATGTCCTAGGAATCATCACCTATGGCATTGCTATCCCTTCAGGGCTTTTCATTCCTGTCATTCTAGCCGGAGCATGCTACGGCCGCCTAGTGGGTAGATTATTCGAGTCTATCTCTACTCTCGACACGGGGTTATTTGCCCTTCTTGGAGCTGCCTCCTTCCTTGGTGGGACCATGAGAATGACCGTTTCCTTATGCGTCATACTCCTTGAGCTCACTAATGACTTGCTTCTGCTTCCTCTTGTCATGTTGGTTCTTCTTATATCGAAAACTGTAGCTGATAGCTTCAATTCAGGTGTCTATGACCAAATATTGAAGATTAAGGGATTGCCTTATTTAGAGGCACATGCTGAACCCTACATGAGGCAGTTAGTAGCACGGGATGTTGTTGCGGGTCCCTTGGTGACATTTTCAGGCATTGAAAAAGTAGGGAATATACTCCATGCATTAAAGACTACAGGGCACAACGGTTTTCCAGTTGTTGATGAGCCGCCCTTTTCTGAAGGGCCCGAGTTATGCGGATTAGTTTTGAGGTCTCATTTACTTGTTTTGTTAAAAGGGAAGTCTTTTTTGACAGAAAGGGCTATAACGGGTGAAGAGATATTGCATCAGTTTGCCGTGTTTGATTTTGCCAAGGCAGGATCAGGGAAGGGAATCAAACTGGAGGATCTTGAATTAGATGAGGATGAGATGGAGATGTATGTGGATCTTCATCCCATTACGAATTCATCTCCTTACACAGTTGTAGAGACAATGTCATTAGCTAAAGCCAAGATTCTTTTCAGACAGCTTGGGCTCCGGCACATGTGCGTCGTTCCAAAGTGTCAAGGGAGGCCGCCTATTGTTGGGATTTTGACGAGGCATGACTTCATGCCGGAGCATGTTTTCGGTCTCTATCCTCATATCAAGCCTCACAAGTAG 2343 44.26 MDEHNLNHGGDEDDASDVENLDGKEIQRLWSQFSDKNFSYSEPLLQRRLNTTSQIAIVGSNLCSIESLDYEIIENELFKQDWRSRKKVQIFQYVVLKWAFALIIGLGTGLVGFFNNIAVENIAGYKLLLTSELMNQEKYIMAFVAFAGCNVVLAAAAAALCAYIAPAAAGSGIPEVKAYLNGIDAYSILAPSTLFVKIFGSILGVSAGFVVGKEGPMVHTGACIANLLGQGGSRKYHLTWKWLRYFKNDRDRRDMITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAIVLRGFIQFCSTGTCGLFGEGGLIMYDVSSSSSTYSWSDILAVIVLGIIGGILGSIYNYLVDKVIRTYSFINERGAAYKVLLVVAISLLTSCCSYGIPWLASCLACPTDVTVSCPTVGESGNYKSFQCPSGYYNDLASLFLNTNDDAIRNLFSSSSEKTFQISTLLIFFAAVYVLGIITYGIAIPSGLFIPVILAGACYGRLVGRLFESISTLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNDLLLLPLVMLVLLISKTVADSFNSGVYDQILKIKGLPYLEAHAEPYMRQLVARDVVAGPLVTFSGIEKVGNILHALKTTGHNGFPVVDEPPFSEGPELCGLVLRSHLLVLLKGKSFLTERAITGEEILHQFAVFDFAKAGSGKGIKLEDLELDEDEMEMYVDLHPITNSSPYTVVETMSLAKAKILFRQLGLRHMCVVPKCQGRPPIVGILTRHDFMPEHVFGLYPHIKPHK 780
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 7787359 7792736 - Conep08aG0080600.1 Cone8ag0780 443329
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0780 780 PRINTS Chloride channel signature 518 534 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone8ag0780 780 PRINTS Chloride channel signature 197 216 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone8ag0780 780 PRINTS Chloride channel signature 486 506 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone8ag0780 780 PRINTS Chloride channel signature 166 183 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone8ag0780 780 PRINTS Chloride channel signature 261 280 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone8ag0780 780 PRINTS Chloride channel signature 574 588 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone8ag0780 780 PRINTS Chloride channel signature 536 555 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone8ag0780 780 PRINTS Plant CLC chloride channel signature 71 79 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Cone8ag0780 780 PRINTS Plant CLC chloride channel signature 282 290 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Cone8ag0780 780 PRINTS Plant CLC chloride channel signature 438 454 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Cone8ag0780 780 PRINTS Plant CLC chloride channel signature 296 306 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Cone8ag0780 780 PRINTS Plant CLC chloride channel signature 314 321 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Cone8ag0780 780 Gene3D Clc chloride channel 89 587 - -
Cone8ag0780 780 ProSiteProfiles CBS domain profile. 714 778 IPR000644 -
Cone8ag0780 780 Gene3D - 588 770 IPR046342 -
Cone8ag0780 780 CDD CBS_pair_voltage-gated_CLC_euk_bac 600 767 - -
Cone8ag0780 780 Pfam CBS domain 715 765 IPR000644 -
Cone8ag0780 780 FunFam Chloride channel ClC3 89 409 - -
Cone8ag0780 780 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 48 768 IPR051280 GO:0009705(PANTHER)|GO:0015108(PANTHER)|GO:0043231(PANTHER)
Cone8ag0780 780 Pfam Voltage gated chloride channel 154 568 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone8ag0780 780 SUPERFAMILY CBS-domain pair 591 765 IPR046342 -
Cone8ag0780 780 SUPERFAMILY Clc chloride channel 75 590 IPR014743 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0840 Cone-Chr14:5213351 Cone8ag0780 Cone-Chr8:7787359 3.97E-225 dispersed
Cone16ag0837 Cone-Chr16:9007941 Cone8ag0780 Cone-Chr8:7787359 0 dispersed
Cone16ag0988 Cone-Chr16:9739563 Cone8ag0780 Cone-Chr8:7787359 4.46E-77 dispersed
Cone2ag0049 Cone-Chr2:247321 Cone8ag0780 Cone-Chr8:7787359 5.38E-276 dispersed
Cone2ag0205 Cone-Chr2:1082670 Cone8ag0780 Cone-Chr8:7787359 0 dispersed
Cone3ag0892 Cone-Chr3:4599137 Cone8ag0780 Cone-Chr8:7787359 0 dispersed
Cone12ag0789 Cone-Chr12:7236184 Cone8ag0780 Cone-Chr8:7787359 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0780 K05016 - vvi:100259734 1193.72