Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0792 ATGAATTCGTCATCCACCCAATTTGTTTCCTCAAGAAGAATGGAAGTTTATGAACCAATCCACCAGTTTGGCATGTGGGAAGAAAACTTCAAATGTAATAGTAATATGCACACATCTGGAACCCTGATCATGGAGGCAGACACAAAACTAGATGATCATTCAGATAATGCTTCACTGGGGTCAATGGGACTTCCTCACAAATATGAGCAAGAAGCAACAAGACCAAATGATAAGACACTAAGAAGGCTTGCACAAAACCGGGAGGCAGCTCGTAAAAGCCGCCAGCGGAAAAAGGCCTATGTTCAGCAATTAGAAAAAAGTCGCTTGAAGCTGGTTCAATTAGAGCAGGAGCTTGAGAAAGCAAGACAACAAGGTCTTTATGCTGGTGGTGGTGCATTTGATGTTAATCAGATGGGATTCTCTGGAGCAGTAAATTCAGGTGTGACCACATTTGAGATGGAGTATAGACATTGGGTGGAAGAGCAAAACAGTCAGATCAGCGAGCTGAGAACTGCTTTACGTGCTGATATATCTGACAGGGAGCTTGAAATGCTTGTGAAAAGTTGTTTGGATCATTATATTGATCTTTTCCGAATGAAAGCAATAGCTGCAAAATCCGACGTCTTTTATGTATTATATGGAATGTGGAAAACACCAGTCGAAAGATTTTTCTTCTGGATTGGAGGATTTCGCCCTTCAGAGATCCTTAAGGTTCTTGAGCCTCAGCTTGAAACATTGACCAACCAACAGCATATGGATGTCATAAAACTTACAGATTCATGTCAGCAAGCAGAAGACGCTCTCCGGCAAGGTATGGAGAAACTCCAGCAAACCCTAACTGATAGTGTAGTGGCTGGTCGGCTTGGTGATGGAAGTTATCCCATTCAGATGTCTACTGCAATGGAGAGGCTAGAAAATCTGGTCAGCTTTGTAAATCAGGCGGACTACCTCAGACAGGAAACACTGCAACAGATGAAGAAAATTTTATCTATACGGCAATCAGCCCATGGCTTGCTAGTACTGGGGGACTACTTCCATAGACTCAGAGCCTTCAGCTTGGTTTGGGCTAATTGTTCAGGTGAGCCTGCCTAG 1092 43.22 MNSSSTQFVSSRRMEVYEPIHQFGMWEENFKCNSNMHTSGTLIMEADTKLDDHSDNASLGSMGLPHKYEQEATRPNDKTLRRLAQNREAARKSRQRKKAYVQQLEKSRLKLVQLEQELEKARQQGLYAGGGAFDVNQMGFSGAVNSGVTTFEMEYRHWVEEQNSQISELRTALRADISDRELEMLVKSCLDHYIDLFRMKAIAAKSDVFYVLYGMWKTPVERFFFWIGGFRPSEILKVLEPQLETLTNQQHMDVIKLTDSCQQAEDALRQGMEKLQQTLTDSVVAGRLGDGSYPIQMSTAMERLENLVSFVNQADYLRQETLQQMKKILSIRQSAHGLLVLGDYFHRLRAFSLVWANCSGEPA 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7958365 7961224 + Conep08aG0081800.1 Cone8ag0792 443341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0792 363 CDD bZIP_HBP1b-like 78 130 - -
Cone8ag0792 363 SUPERFAMILY Leucine zipper domain 78 119 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0792 363 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 120 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0792 363 SMART brlzneu 74 157 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0792 363 Coils Coil 97 124 - -
Cone8ag0792 363 Pfam bZIP transcription factor 77 120 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0792 363 MobiDBLite consensus disorder prediction 53 79 - -
Cone8ag0792 363 Pfam Seed dormancy control 165 240 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cone8ag0792 363 ProSiteProfiles DOG1 domain profile. 148 358 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cone8ag0792 363 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0792 363 FunFam BZIP family transcription factor 77 126 - -
Cone8ag0792 363 Gene3D - 77 126 - -
Cone8ag0792 363 PANTHER TRANSCRIPTION FACTOR TGA9 1 359 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1246 Cone-Chr17:8978604 Cone8ag0792 Cone-Chr8:7958365 5.12E-106 dispersed
Cone20ag0480 Cone-Chr20:2568276 Cone8ag0792 Cone-Chr8:7958365 5.20E-108 dispersed
Cone4ag1363 Cone-Chr4:11088249 Cone8ag0792 Cone-Chr8:7958365 1.06E-88 dispersed
Cone5ag1347 Cone-Chr5:8085681 Cone8ag0792 Cone-Chr8:7958365 2.25E-82 dispersed
Cone12ag0745 Cone-Chr12:6847559 Cone8ag0792 Cone-Chr8:7958365 8.72E-235 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46675 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0792 K14431 - mdm:103416129 471.855