Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0793 ATGAAGGGATCAACTAGAGATTTAGTTCTGCTCTGGTTGATCCTGTTCGTATACTGTCTCTCTAACATCGTTGCCAATGTAGAAGGCGATGCTTTACATAGCTTTCGAATCAGTATAAAAGACCCTAACAGTGTCTTGCAAAGTTGGGATCCTACACTGGTAAACCCTTGCAATTGGTTTCATGTCACATGCAATGATGTAGATCATGTTATCAGAGTTGATCTGGGAAATGCAGGATTATCTGGTCAATTAGTACCACAATTGGGTCTTCTTAAAAGCTTACAGTACCTGGAACTTTATGGTAATAACATCAATGGACAGATTCCAAATGATCTTGGTAATTTGACAGAACTGGTGAGCGTGGATCTTTACATGAACAGTTTAACCGGCCCCATTCCAGACACATTCGGAAAGCTCACAAAAATGCGTTTCCTCCGGCTTAACAACAACAACCTATCAGGTTCAATACCTATATCCTTGACTAATATTACAGCCCTGCAAGTCTTGGATCTATCAAACAACCAACTATCTGGACCTGTTCCAGATAATGGCTCATTTTCACTGTTCACTCCTGTCAGTTTTGCAAATAATTTCAATCTATGTGGTCCAGTAACTGGAAAACCCTGCCCTGGGTCTCCCCCATTTGCTCCACCTCCTCCATTTGTTCCATCATCAACGGTTTCATCTTCTGAACAAAATAGCCCCGATGGAGCAATCGCTGGTGGAGTGGCTGCTGGTGCTGCATTACTGTTTGCTGCTCCAGCAATTATATTTGCATATTGTCGCCGAAGAAAATCACAAGAACATTTTGTCGATGTACCTGCCGAAGAAGATCCAGAAGTCCACTTGGGACAGCTGAAAAGATTTTCTCTGAGAGAATTACAAGTTGCAACCGATAACTTTAGCAACAAAAGTATTCTAGGAAGAGGTGGATTTGGTAAGGTGTATAAAGGGCGTTTAACTGATGGCACATTAGTGGCTGTAAAAAGACTTAAAGAAGAACGCACACCAGGTGGGGAGCTGCAGTTTCAAACAGAAGTAGAAATGATAAGCATGGCTGTGCATCGGAATCTTCTCCATTTACATGGTTTCTGTATGACATCATCTGAGCGTCTTCTTGTTTATCCTTATATGGCTAATGGAAGCGTAGCATCATGTCTAAGAGAGCGGCCACAATCAGAACCGCCTCTTGATTGGCCAACCAGGAAGAGAGTTGCATTAGGTTCTGCAAGGGGCCTTTCTTATTTACATGATCACTGTGATCCGAAAATCATACATCGAGATGTCAAAGCTGCAAATATTTTGCTGGATGAGGAGTTTGAGGCAGTTGTTGGTGACTTTGGATTGGCTAAACTAATGGACTACAAGGACACTCATGTGACAACAGCTGTGCGTGGGACCATTGGGCATATAGCGCCAGAGTATCTCTCAACTGGAAAGTCGTCTGAGAAGACGGATGTTTTTGGTTACGGGATTATGCTCTTGGAGCTCATAACTGGGCAGAGGGCATTTGATCTTGCTCGTCTTGCAAATGATGATGATGTTATGCTGCTTGATTGGGTGAAGGGACTTCTAAAAGAGAAGAAGCTGGAGATGCTAGTTGATCCTGACCTGCACGACAATTATGTGGATTATGAAGTAGAGCAGTTAATCCAAGTAGCACTTCTCTGCACCCAAAGCTCACCCATGGACCGGCCCAAGATGTCTGAGGTGGTAAGTATGCTCCAAGGAGAAGGCTTGGCTGAAAAATGGAACAAGTGGGAGCAGATTGAGATTGTCTACCATGACATCGAATTGGCTTCGTCTCAGAATTCTGACTGGATCGTCGACTCCATGGACAACCTCCATGCTTTTGAATTGTCCGGTCCCAGATAG 1875 43.57 MKGSTRDLVLLWLILFVYCLSNIVANVEGDALHSFRISIKDPNSVLQSWDPTLVNPCNWFHVTCNDVDHVIRVDLGNAGLSGQLVPQLGLLKSLQYLELYGNNINGQIPNDLGNLTELVSVDLYMNSLTGPIPDTFGKLTKMRFLRLNNNNLSGSIPISLTNITALQVLDLSNNQLSGPVPDNGSFSLFTPVSFANNFNLCGPVTGKPCPGSPPFAPPPPFVPSSTVSSSEQNSPDGAIAGGVAAGAALLFAAPAIIFAYCRRRKSQEHFVDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNKSILGRGGFGKVYKGRLTDGTLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLHLHGFCMTSSERLLVYPYMANGSVASCLRERPQSEPPLDWPTRKRVALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLHDNYVDYEVEQLIQVALLCTQSSPMDRPKMSEVVSMLQGEGLAEKWNKWEQIEIVYHDIELASSQNSDWIVDSMDNLHAFELSGPR 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7971620 7976782 - Conep08aG0081900.1 Cone8ag0793 443342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0793 624 SUPERFAMILY L domain-like 29 190 - -
Cone8ag0793 624 Gene3D Ribonuclease Inhibitor 24 211 IPR032675 -
Cone8ag0793 624 FunFam Somatic embryogenesis receptor-like kinase 1 378 595 - -
Cone8ag0793 624 Gene3D Transferase(Phosphotransferase) domain 1 378 595 - -
Cone8ag0793 624 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 624 - -
Cone8ag0793 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 424 436 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone8ag0793 624 Pfam Leucine Rich Repeat 93 115 IPR001611 GO:0005515(InterPro)
Cone8ag0793 624 MobiDBLite consensus disorder prediction 211 234 - -
Cone8ag0793 624 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Cone8ag0793 624 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524(InterPro)
Cone8ag0793 624 Gene3D Phosphorylase Kinase; domain 1 270 377 - -
Cone8ag0793 624 FunFam Somatic embryogenesis receptor kinase 1 24 211 - -
Cone8ag0793 624 FunFam Somatic embryogenesis receptor kinase 1 270 377 - -
Cone8ag0793 624 ProSiteProfiles Protein kinase domain profile. 301 580 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone8ag0793 624 Pfam Leucine rich repeat 117 176 IPR001611 GO:0005515(InterPro)
Cone8ag0793 624 SMART serkin_6 301 575 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone8ag0793 624 SUPERFAMILY Protein kinase-like (PK-like) 280 575 IPR011009 -
Cone8ag0793 624 Pfam Protein tyrosine and serine/threonine kinase 304 575 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1526 Cone-Chr4:11830753 Cone8ag0793 Cone-Chr8:7971620 4.24E-290 dispersed
Cone7ag1426 Cone-Chr7:10133383 Cone8ag0793 Cone-Chr8:7971620 1.69E-259 dispersed
Cone8ag0224 Cone-Chr8:1234321 Cone8ag0793 Cone-Chr8:7971620 2.51E-154 dispersed
Cone8ag0793 Cone-Chr8:7971620 Cone9ag0505 Cone-Chr9:2417772 1.15E-152 dispersed
Cone12ag0747 Cone-Chr12:6856057 Cone8ag0793 Cone-Chr8:7971620 6.15E-154 wgd
Cone6ag1615 Cone-Chr6:12479507 Cone8ag0793 Cone-Chr8:7971620 1.84E-81 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83121 PF13225 DUF4033 1.90E-37 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0793 K13418 - rcu:8287891 983.015