Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0794 ATGAGTGGAAAAAGAACCCAAACAATCGGCAGCCCCGTCGGAAGCCCATCTTGCGGTAACATCTCGGACAGCTCCTCCAAAGAGCAAGACAGGTTCCTCCCGATAGCCAATGTGGGCCGCATCATGAAAAAATCCCTCCCGGGAAACGCTAAGATCTCGAAAGAAGCCAAAGAAACCGTCCAAGAATGTGTTTCCGAGTTCATCAGCTTCATAACGGGCGAGGCTTCCGATAAGTGTCAACGAGAGAAGAGGAAGACAATCAACGGGGACGATCTCTTGTGGGCCATGACTACTCTAGGGTTTGAGAATTATGTGGGACCCTTGAAGGTTTATCTTAGTAAGTATAGAGAGACTGAGGAGGAGAAGCATTCTCTAGCTAGAATACAAGATCAAGACCCTAATCACCCTGATGAAGATCACTCGCCTGCAGCCAAAACGCCTAAGATAAATAACAATGATCCGATTGGTCAAAATGTGGATTTCCAGAATTTTAATGGCGGGATTTATTCGCTTGGGACACAAGTTAGTTCTAATAATTCTGTTGGAAGGGTGATTGGCTATGGAGAAAACTTGATGGCAAGGGCTTTTAATATCAATGGCGTGCATGAAAACATGGGTGATGGAAATGGTAGTAGAGCTCCTGCCATGGCAGCTCACCTTCATCACGGATCTGGGTGGTAA 681 46.26 MSGKRTQTIGSPVGSPSCGNISDSSSKEQDRFLPIANVGRIMKKSLPGNAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKVYLSKYRETEEEKHSLARIQDQDPNHPDEDHSPAAKTPKINNNDPIGQNVDFQNFNGGIYSLGTQVSSNNSVGRVIGYGENLMARAFNINGVHENMGDGNGSRAPAMAAHLHHGSGW 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7983909 7984589 + Conep08aG0082000.1 Cone8ag0794 443343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0794 226 MobiDBLite consensus disorder prediction 122 157 - -
Cone8ag0794 226 ProSitePatterns NF-YB/HAP3 subunit signature. 63 79 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone8ag0794 226 MobiDBLite consensus disorder prediction 1 29 - -
Cone8ag0794 226 MobiDBLite consensus disorder prediction 122 144 - -
Cone8ag0794 226 FunFam Nuclear transcription factor Y subunit B-3 21 145 - -
Cone8ag0794 226 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Cone8ag0794 226 PRINTS CCAAT-binding transcription factor subunit A signature 60 78 - -
Cone8ag0794 226 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Cone8ag0794 226 Gene3D Histone, subunit A 19 152 IPR009072 GO:0046982(InterPro)
Cone8ag0794 226 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 96 IPR003958 -
Cone8ag0794 226 SUPERFAMILY Histone-fold 29 140 IPR009072 GO:0046982(InterPro)
Cone8ag0794 226 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 22 152 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0958 Cone-Chr5:4086566 Cone8ag0794 Cone-Chr8:7983909 2.76E-37 dispersed
Cone8ag0794 Cone-Chr8:7983909 Cone8ag1366 Cone-Chr8:10907603 3.88E-55 dispersed
Cone12ag0762 Cone-Chr12:7020540 Cone8ag0794 Cone-Chr8:7983909 8.86E-143 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46676 PF14226 DIOX_N 5.10E-26 CL0029 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0794 K08065 - cit:102607711 297.745