Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0795 ATGTTGGGAGGAGGTGGAGGTGGCGGGTCGTCAGGGCGGATGCCGACATGGAAGGAGAGGGAGAACAATAAGAAGAGGGAAAGGAGGAGGAGAGCCATTGCTGCCAAGATTTACTCTGGTCTTAGAGGTCAGGGAAGCTACAAGCTTCCTAAACACTGCGACAATAACGAGGTCTTGAAGGCTCTCTGTTCTGAAGCTGGTTGGATCGTCGAAGACGATGGCACGACCTACCGCAAGGGATTCAAGCCATCTGCAGGCGATGTAGCGTGCCCGTCCATAAACATGAGCTCCTGTTCCTCCCTTCAACCAAGCCCACAATCATCATCCTTCCCAAGCCCCATTCCATCCTACCATGTCAGCCCATCTTCCTCCCCCTTCCACAGTCCAACCCATTTCGAAAACCCCTCCTCATACCTCCTCCCATTTCTCCGCAACATAGCCTCCATACCCAATAACCTCCCTCCTCTTAGAATATCAAATAGTGCACCTGTAACCCCTCCACTCTCTTCTCCCACCTCTAGAGGCTCAAAACGGAAGTCAGACTGGGACTCTCTAACCAACGGGTCCTTAACATCTTTCCGCCACCCCCTTTTTGCTGCATCAGCTCCTTCTAGCCCAACCAGACGGGCCCACCTCACCCCAGCCACGATCCCGGAATGTGATGAGTCTGATGCATCCACCGTGGACTCAGGTCGGTGGGTCAGCTTCCAGATGGTGGCGTCTGCAGGGGGGGCTGCACCGCCTTCGCCGACGTTTAATCTAATGAAACCGGTGAGTCATCAGGGTTTACACCAGGATGGGGTTGACCATGGTAGGGTTGGGCAGGGGATGACCGGAATGGGTGAGAGGGTACATGGGTCAGAGTTTGAGTTTGAGAGTGGAACAGTTAAGCCATGGGAAGGGGAGAGAATTCATGAGGTTGGCGTGGATGAATTGGAGCTAACTCTTGGAAGTGGGAAGACTCATTAG 969 53.77 MLGGGGGGGSSGRMPTWKERENNKKRERRRRAIAAKIYSGLRGQGSYKLPKHCDNNEVLKALCSEAGWIVEDDGTTYRKGFKPSAGDVACPSINMSSCSSLQPSPQSSSFPSPIPSYHVSPSSSPFHSPTHFENPSSYLLPFLRNIASIPNNLPPLRISNSAPVTPPLSSPTSRGSKRKSDWDSLTNGSLTSFRHPLFAASAPSSPTRRAHLTPATIPECDESDASTVDSGRWVSFQMVASAGGAAPPSPTFNLMKPVSHQGLHQDGVDHGRVGQGMTGMGERVHGSEFEFESGTVKPWEGERIHEVGVDELELTLGSGKTH 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7987106 7989386 + Conep08aG0082100.1 Cone8ag0795 443344

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0795 322 MobiDBLite consensus disorder prediction 158 175 - -
Cone8ag0795 322 Pfam BES1/BZR1 plant transcription factor, N-terminal 10 133 IPR008540 -
Cone8ag0795 322 MobiDBLite consensus disorder prediction 158 187 - -
Cone8ag0795 322 MobiDBLite consensus disorder prediction 96 116 - -
Cone8ag0795 322 MobiDBLite consensus disorder prediction 1 30 - -
Cone8ag0795 322 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 11 322 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0795 K14503 - - mdm:103401849 431.795
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1892 Cone-Chr4:13494607 Cone8ag0795 Cone-Chr8:7987106 1.45E-90 dispersed
Cone8ag0795 Cone-Chr8:7987106 Cone9ag0944 Cone-Chr9:4662970 2.85E-45 dispersed
Cone12ag0761 Cone-Chr12:7015882 Cone8ag0795 Cone-Chr8:7987106 2.34E-151 wgd
Cone7ag1804 Cone-Chr7:11802434 Cone8ag0795 Cone-Chr8:7987106 4.75E-77 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g920 . . . . . . Bma09g00060 . . . Cma03g00775 Cma07g00508 Car03g00704 Car07g00444 Sed14g1094 . . Bhi03g01260 Tan03g1950 Cmetu08g1008 . Hepe04g1483 . . . . . . . . . Cone8ag0795 . . . Lsi01g00704 . . . . Blo06g00124 . . . Bpe06g00056 . . . Cmo03g00806 Cmo07g00506 . . . . . . . . . . . . . . . . . . . . . . Chy02g00673 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone4ag1892 . 33 310 BZR Transcription Factor Family AT1G75080 67.3 4.9e-91 332.0
Cone7ag1804 . 33 307 BZR Transcription Factor Family AT1G75080 56.7 3.8e-83 305.8
Cone12ag0761 . 19 303 BZR Transcription Factor Family AT1G75080 53.3 3.9e-72 269.2
Cone8ag0795 . 32 321 BZR Transcription Factor Family AT1G75080 54.1 1.3e-70 264.2
Cone4ag1892 . 33 311 BZR Transcription Factor Family AT1G19350 65.1 1.0e-88 324.3
Cone7ag1804 . 33 306 BZR Transcription Factor Family AT1G19350 57.2 5.5e-82 302.0
Cone12ag0761 . 19 304 BZR Transcription Factor Family AT1G19350 55.5 2.2e-75 280.0
Cone8ag0795 . 32 322 BZR Transcription Factor Family AT1G19350 52.6 7.4e-71 265.0
Cone12ag0761 . 1 299 BZR Transcription Factor Family AT3G50750 55.3 2.9e-73 272.7
Cone4ag1892 . 1 305 BZR Transcription Factor Family AT3G50750 55.0 3.2e-64 242.7
Cone6ag0940 . 77 329 BZR Transcription Factor Family AT4G18890 54.5 4.6e-55 211.8
Cone9ag0944 . 77 329 BZR Transcription Factor Family AT4G18890 54.5 7.9e-55 211.1
Cone6ag0940 . 1 329 BZR Transcription Factor Family AT1G78700 71.2 8.9e-114 407.5
Cone9ag0944 . 1 329 BZR Transcription Factor Family AT1G78700 70.6 1.7e-112 403.3
Cone6ag0204 . 1 304 BZR Transcription Factor Family AT1G78700 61.3 1.1e-98 357.5
Cone12ag0761 . 19 191 BZR Transcription Factor Family AT4G36780 78.5 1.7e-62 236.9
Cone8ag0795 . 32 204 BZR Transcription Factor Family AT4G36780 64.4 1.4e-48 190.7
Cone4ag1892 . 33 204 BZR Transcription Factor Family AT4G36780 58.4 2.0e-39 160.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009316 0 1 1 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46677 PF01545 Cation_efflux 5.60E-47 No_clan Cone TF