Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0800 ATGTCCTCCGCCTTGACATCCGTCGGCTGTGGCAACTTCAGATCGAGATCCACCACTCTCTCCGATGACGACGACCGCAGCAGATCACCAGTTCCACCACCAGACTTCAAGTGGAATAGAGAAGACGAGTGGCACGTAATGGCCAAAGTCCACAATGATCATGATGATCTGGACCCACCACGGCAGACTTGCAACTCCGCGTTTTTCGCTGATTGCTCTGACTGCGAAGACGACGACAAGAGCCATGGTTTAGCTCCTCCTCCTACTCCTCCTCCACCACCACCACCGCCCATGGTAAAGCGACGAGTGAAGAGTCATAAACCGACATCCAGGCTACGCATCAGCAGCTCATCAGTTGAAAGTAATCTGTCCAGCAGCGATGAAGGAGGCTTCGAAACGGAAACCCTAGTTTCATCAGCTTCCAGAATTAGCTTCTCGACGGACTCTTCATCGCTTCATTACACGAGGCAAAGAAAAAAGAAGAAGAAGAAGATCGTAAAGAAAGTCAAGAAGCTGAAACGGTGCGTCTCAGTAACGACGACGTCGCCGGAGTCAGGCGAGTCTCCTGCGAGGCTATCTGTGTTTCAGAGGCTGATACCATGGAGGGTTGACGGGAAAGTGAGGGAGAGCTACGCGGTGGTGAAGAAATCGGAGGATCCGTACGAGGATTTCAAGAGGTCGATGGTGGAGATGATTTTAGAGAAGGAGATGTTTGATGAGAAGGAGCTGGAGCAGCTCTTGCACTGCTTCTTGTCGTTGAATGGTAAGCAGCATCATGGTGTAATTCTCGAGGCTTTCTCTGAGATATGGGAAACGCTTCTGTTTTATGCAAGAAGAAGATCGTCGTCTGCTAGTACTAGAGATGCTAGATAG 873 50.29 MSSALTSVGCGNFRSRSTTLSDDDDRSRSPVPPPDFKWNREDEWHVMAKVHNDHDDLDPPRQTCNSAFFADCSDCEDDDKSHGLAPPPTPPPPPPPPMVKRRVKSHKPTSRLRISSSSVESNLSSSDEGGFETETLVSSASRISFSTDSSSLHYTRQRKKKKKKIVKKVKKLKRCVSVTTTSPESGESPARLSVFQRLIPWRVDGKVRESYAVVKKSEDPYEDFKRSMVEMILEKEMFDEKELEQLLHCFLSLNGKQHHGVILEAFSEIWETLLFYARRRSSSASTRDAR 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8035463 8036335 + Conep08aG0082600.1 Cone8ag0800 443349

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0800 290 MobiDBLite consensus disorder prediction 18 41 - -
Cone8ag0800 290 MobiDBLite consensus disorder prediction 74 130 - -
Cone8ag0800 290 MobiDBLite consensus disorder prediction 110 130 - -
Cone8ag0800 290 MobiDBLite consensus disorder prediction 1 17 - -
Cone8ag0800 290 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 105 279 IPR038933 GO:0045892(InterPro)
Cone8ag0800 290 NCBIfam uncharacterized plant-specific domain TIGR01568 212 273 IPR006458 -
Cone8ag0800 290 ProSiteProfiles OVATE domain profile. 213 272 IPR006458 -
Cone8ag0800 290 MobiDBLite consensus disorder prediction 84 99 - -
Cone8ag0800 290 MobiDBLite consensus disorder prediction 1 41 - -
Cone8ag0800 290 SUPERFAMILY Formin homology 2 domain (FH2 domain) 86 97 - -
Cone8ag0800 290 Pfam Transcriptional repressor, ovate 217 273 IPR006458 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0800 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1413 Cone-Chr11:10131431 Cone8ag0800 Cone-Chr8:8035463 1.05E-18 dispersed
Cone18ag0177 Cone-Chr18:917305 Cone8ag0800 Cone-Chr8:8035463 3.80E-19 dispersed
Cone19ag1131 Cone-Chr19:8104333 Cone8ag0800 Cone-Chr8:8035463 2.31E-17 dispersed
Cone2ag0290 Cone-Chr2:1507834 Cone8ag0800 Cone-Chr8:8035463 4.22E-25 dispersed
Cone4ag1902 Cone-Chr4:13539352 Cone8ag0800 Cone-Chr8:8035463 8.67E-26 dispersed
Cone5ag1841 Cone-Chr5:12934926 Cone8ag0800 Cone-Chr8:8035463 1.80E-10 dispersed
Cone7ag0682 Cone-Chr7:3765587 Cone8ag0800 Cone-Chr8:8035463 6.91E-20 dispersed
Cone12ag0753 Cone-Chr12:6960497 Cone8ag0800 Cone-Chr8:8035463 4.85E-143 wgd
Cone17ag1333 Cone-Chr17:9384941 Cone8ag0800 Cone-Chr8:8035463 7.84E-25 wgd
Cone7ag1816 Cone-Chr7:11846084 Cone8ag0800 Cone-Chr8:8035463 1.13E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g945 Blo04g00923 Blo16g00038 . . . . . . Cmo04g00834 . . . . . . . . . . . . . . . . . . . . . . Cone8ag0800 Cone12ag0753 . . . . Chy07g01287 . . . . . . . Bma03g00994 . . . . . . . . . . . . . . . . . Cla07g00862 Cam07g0934 Cec07g0999 Cco07g0977 Clacu07g0908 Cmu07g0908 Cre07g1276 Lsi07g00211 Csa04g00514 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011669 1 0 2 1 0 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 1 0 2 1 1 1 1 1 1 2 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46680 PF00332 Glyco_hydro_17 1.30E-87 CL0058 Cone TF