Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0805 ATGATTGAAGAGGAGAAAATGGGAAATGATGGAGCTGCGGACTCCCCGACTTCAGTGCTTGCAGACGAGGATTTATGTATAAAAGAAACTGGGGTCAAATTGGAAGAGGGGATACTTCAAGAAGCAAAAAATGGGGATTCCACACTTGTATCACTGGACATGGCAGAGGAGGAAAGAAAGTTGCTGGACGCTCGGGTAAAGGAAGAAGAGGCAGAGAAAGAGAAGGAATCATCAGAGTTACCACACTTGGATGATACTCAATTTACCAAGTTGGATGAGCTTCTCACCCAAACACAGCTCTACTCAGAGTTTTTGCTGGAGAAAATGGACGACATTACATTAAATGGAGCAGAGGAGAGTGAACCTGTTGAGAAAAAAGGAGGTCGTGGTTCGAAAAGAAAAGCTGCAAAACAGTACAATAATAGGAAGGCCAAGAGGGCAGTTGCAGCTATGCTAGATAGATCTAAAGAAGGTGAGAATGCTGAAGATGTAAATTTGACTGAAGAAGAAAGAGTTGAGAAGCAACAGAGAGAACTTGTACCTCTACTGACTGGTGGAAAATTGAAGTCATATCAACTTAAAGGTTTGAAGTGGCTGATCTCATTATGGCAAAATGGACTTAATGGGATCCTAGCAGATCAAATGGGTCTTGGAAAGACAATTCAAACGATTAGTTTCCTTGCACACCTTAAAGGCAAAGGCTTGGATGGACCCTACTTAGTTATTGCTCCACTTTCTACTCTCTCAAATTGGGTAAATGAGATATCAAGATTTGTGCCCTCAATTAATTCTATTATTTATCACGGTGGCAAGAAACAAAGAGAGGAATTGCGAAGGAAGAGCATGCCAAAAACTGTTGGCCCTAGATTCCCTATAGTAGTTACTTCTTATGAGATTGCAATGAGTGATGCAAAAAAATATTTGAGGCATTACAATTGGAAATATCTTGTAGTTGATGAGGGACACAGGTTGAAAAACTCCAAGTGCAAATTACTTAAGGAGTTAAAGTATTTATCTGTTGAAAACAAACTCCTGTTAACTGGAACACCACTACAGAATAATTTGGCAGAGCTTTGGTCATTGTTGAACTTCATCCTGCCTGATATTTTCTCATCACATGATGAATTTGAATCATGGTTCGACCTTTCAGGCAAGTGCCACACTGACGAAAAAGAAGAGTTAGAAGATAAGAGGAAAGCTCGAGTGGTAGCTAAGCTCCATGCAATATTGCGTCCATTTCTACTTCGGAGAATGAAATCAGATGTTGAGCACATGCTCCCTCGGAAAAAAGAGATCATAGTTTATGCCAATCTGACCGAGCATCAAAAGAATATCCAAGATCATTTGATCAATAGGACATTGGAGAACCATCTTCGAGAGAAGTCATTTACTGGACACGGCATGAAAGGGAGGCTTAATAATTTAATGATTCAACTTCGGAAGAATTGCAACCATCCTGACCTCCTAGAGTCAGCTTTTGATGGATCATGTATCGCTCTGTGTCAGTCTATTGTTTTCTTGATTAATGTGTGCCCCACATATTCACTTGAGCCCTTTGTCCTGGCAGATATGTACCCACCTTTGGAACAGATGGTTGAACAGTGTGGAAAATTTCGTTTGCTGGACAGACTGTTGGCACAGCTACTTGCTCGGAAGCATAAAGTTCTTATCTTCAGCCAGTGGACCAAGATCTTGGATATCATGGACTACTATTTTAGCGAAAAGGGACTCGAAGTATGCAGAATTGATGGGAATGTGAAACTGGATGAAAGGAGAAGACAGATTCAGGCATTCAATGAGGAAAACAGTGATTCTAGGATTTTTCTTCTAAGCACCCGGGCTGGTGGACTGGGTATTAACCTTACTGCAGCTGATACTTGTATACTATATGACAGCGACTGGAATCCTCAAATGGATTTACAGGCAATGGATAGGTGCCACAGGATTGGTCAAACTAAGCCCGTTCACGTTTACCGGCTTGCAACAGCTCAGTCTGTAGAGGGCCGTATTCTTAAAAGAGCTTTTAGTAAGCTTAAACTTGAGCATGTGGTCATTGGAAAGGGCCAGTTTCACCAAGAACGTTCCAAACCTAATTCTACAGATGTATTGGAGCAAGAGGATTTGCTGGAACTTCTGAGGGATCAAGAATCGGCTGAAGACAAGGTGATACAGACAGAAATCAGCAACGAGAATTTGGTAAGAATTCTGGATCGTAGTGACCTTATTGCACGGCTGCCATCAGATGAAGACAATAAACCAACTGATTCTGGTGATGTTGATGGTAATAAGCCTGATGGGTATCCTCCTAAAGGGCCGGGGTGGGAAGTTGTGGTAACAGTTTCGACCGGTGGTGTGCTGTCCAACCTTAACAGTTGA 2376 41.79 MIEEEKMGNDGAADSPTSVLADEDLCIKETGVKLEEGILQEAKNGDSTLVSLDMAEEERKLLDARVKEEEAEKEKESSELPHLDDTQFTKLDELLTQTQLYSEFLLEKMDDITLNGAEESEPVEKKGGRGSKRKAAKQYNNRKAKRAVAAMLDRSKEGENAEDVNLTEEERVEKQQRELVPLLTGGKLKSYQLKGLKWLISLWQNGLNGILADQMGLGKTIQTISFLAHLKGKGLDGPYLVIAPLSTLSNWVNEISRFVPSINSIIYHGGKKQREELRRKSMPKTVGPRFPIVVTSYEIAMSDAKKYLRHYNWKYLVVDEGHRLKNSKCKLLKELKYLSVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSHDEFESWFDLSGKCHTDEKEELEDKRKARVVAKLHAILRPFLLRRMKSDVEHMLPRKKEIIVYANLTEHQKNIQDHLINRTLENHLREKSFTGHGMKGRLNNLMIQLRKNCNHPDLLESAFDGSCIALCQSIVFLINVCPTYSLEPFVLADMYPPLEQMVEQCGKFRLLDRLLAQLLARKHKVLIFSQWTKILDIMDYYFSEKGLEVCRIDGNVKLDERRRQIQAFNEENSDSRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAFSKLKLEHVVIGKGQFHQERSKPNSTDVLEQEDLLELLRDQESAEDKVIQTEISNENLVRILDRSDLIARLPSDEDNKPTDSGDVDGNKPDGYPPKGPGWEVVVTVSTGGVLSNLNS 791
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8080711 8086515 + Conep08aG0083100.1 Cone8ag0805 443354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0805 791 MobiDBLite consensus disorder prediction 117 139 - -
Cone8ag0805 791 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 540 703 IPR001650 -
Cone8ag0805 791 MobiDBLite consensus disorder prediction 744 759 - -
Cone8ag0805 791 MobiDBLite consensus disorder prediction 744 776 - -
Cone8ag0805 791 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 417 IPR027417 -
Cone8ag0805 791 CDD SF2_C_SNF 526 660 IPR049730 -
Cone8ag0805 791 MobiDBLite consensus disorder prediction 1 20 - -
Cone8ag0805 791 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 200 368 IPR014001 -
Cone8ag0805 791 SMART helicmild6 566 650 IPR001650 -
Cone8ag0805 791 Gene3D - 427 681 IPR027417 -
Cone8ag0805 791 SMART ultradead3 184 379 IPR014001 -
Cone8ag0805 791 PANTHER SNF2/RAD54 HELICASE FAMILY 57 762 - GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0008094(PANTHER)|GO:0044030(PANTHER)
Cone8ag0805 791 Pfam SNF2-related domain 191 488 IPR000330 GO:0005524(InterPro)|GO:0140658(InterPro)
Cone8ag0805 791 Pfam Helicase conserved C-terminal domain 537 650 IPR001650 -
Cone8ag0805 791 FunFam ATP-dependent DNA helicase DDM1 182 426 - -
Cone8ag0805 791 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 419 729 IPR027417 -
Cone8ag0805 791 Coils Coil 52 79 - -
Cone8ag0805 791 Gene3D - 183 426 IPR038718 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0805 K19001 - - csv:101214753 1169.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1426 Cone-Chr3:33025145 Cone8ag0805 Cone-Chr8:8080711 5.92E-63 dispersed
Cone7ag0232 Cone-Chr7:986509 Cone8ag0805 Cone-Chr8:8080711 1.68E-126 dispersed
Cone7ag1671 Cone-Chr7:11209732 Cone8ag0805 Cone-Chr8:8080711 1.40E-99 dispersed
Cone8ag0805 Cone-Chr8:8080711 Cone9ag1226 Cone-Chr9:8929108 3.29E-65 dispersed
Cone8ag0805 Cone-Chr8:8080711 Cone7ag0171 Cone-Chr7:714442 4.28E-134 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g955 Blo04g00920 Blo16g00039 . . Bpe15g00433 Bpe13g00452 . . Cmo04g00837 Cmo16g00712 . . . . . . . . . . . . . . . . . . . . . Cone8ag0805 . . . . . Chy07g01291 . . . Bda11g01874 . . . Bma03g00992 Bma06g00128 . . . Cma16g00655 . . . . Cpe14g00559 . . . . . . . Cla07g00866 Cam07g0939 Cec07g1004 Cco07g0982 Clacu07g0912 Cmu07g0912 Cre07g1283 . Csa04g00510 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009588 2 0 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 0 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46681 PF00076 RRM_1 1.40E-07 CL0221 Cone TR