Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0814 ATGGGAACATCAGATGTTGCTGAAGCGGCATCAGAGACAATTCCGAGTTCTTGTTCCTTTAAGGTTCACGGTCTAATGTGCACGGAGGTAATGAAATCGGTCGATCAAATCATGAAGATACTTCCAACAATAGAAGAAGCGAGGCCTAGAGGCCAAGGCATGGAGGCATTATGCTCACTGAGCCGTACAATAGACAAAACAAAGCTACTTCTCCGGGATTGCAGAGAATCCAGCACACTTTACATGGCAGTGACAGGTGATAAAACGATTCAAAGATTTCAGAGAGAAACCAAGCACATGGAGAAAAGTTTACGGCTGATTCAGAACACGGTTTCCACTATGCTTGCTGTAAAGATTTCGCAAATAGTGGATGATCTTAAGGGTATAAAATTTATGCTCGGCTCATCAGAAGAAGAGGCCAGAAAAGCTTTAAGGGAGTGGGTAAAGCAAAACGATACTATACCAAAAGCAAGGGAGGATTCCGAGATTAGAACTCTTAAAATTGTGGGCCCAATGCTTCATATTACATCTCAAGAAGCTATTTCAGCAGAAAAATTGTCACTCACAAAAATGCGAGAGAAAGTTGGGGACAGCGATCAAACGAAAATGAGATTATTGAACAAACTTTATGAGCTCTTGAGCAAGCATGAGCACTTGATTATAAGTTCAGAGGAATTTTCTGATAATAATGCACAGAGTAGGCCCCAAGCCGAATTTCTTACTACCCCTCTTGCCCCCGAGGAATTTAAGTGTCCTCTATCTTCAAAATTGATGTTCGATCCTGTTCTTATTTCATCCGGAGAAACTTATGAAAGGGGATGGATTAAAAAATGGCTTGATGAAGGAAACAATACATGTCCAAAAACCCAGACAAGATTGACCGATCTTTCAATGACTCCTCACATTGCTTTGAAGAGTTCAATATCGAAATGGTGCACAGAAAATGGAGTTAGTATTCCAGACCCAAATGTGCAATTGGATAACTCGTGGGAAATTTCTTCAAATTCAATATCTAGCCTTGGAAGTTCTATGAACGATATATCTCTGCACATTGGTCTAGGGAATATACCGCTTGGATATCTTAATAGTGGTTATAATTTAGATTCGGTGCGAACAAGAACTCGTAATGATCCTCAAAATATTCTATATGAGGAGTTGGAGTTTTCATCTGGGTTCAATGAGCTTGCACAAGAAAACCAATGCAAGGTAATTGAAGATATGACGAATCGCTTGAAGGAGAATGGTGGAGTTGCTCATGTTTTATCGGAGAATTTCATGGAACGACTTGAAAGATTTTTAAGGGATGCACTTAACCTGCATAATTCGAGAGCTCTTAGGGATGGACTTGAGTTACTACGGACACTTGTGAGCTCGACCAGAAATGGAACACCGACTAATGGAATTGGTGACATGTTGGGTTTGTTAGACACTTTGCTTCAATCCGAACCAACCAGTGAAGTTTTTACCGTTTTAGAAGCATTATCAACTCATCCGAACTATAAACTGAAACTCTTAAGATCTGATATTCTCCCTACAGTTCTAAAGATCCTTGATTCACAAGCCAAAGGATCTCAAGAAAGTGCTCTTAAGATTCTATGCAATTTATCCTCAAACAACGACAGCAACAACAATGAAATTTGCTCCAAAATGATCTCATTGAATTGCATCCCGAAATTGGTTCCTTTGTTCCAAGACGAATCTCTTTCCGGAAAGTGTATTCTTATACTAGAAAATTTGTGCAATGCTGAAGAGGGAAGAGTATCTATAACAGAAACCGAAGGCTGCCTTGAATCCATTGCTCGAGTTGTAGACAGCAACTGCGAAGAGGAACAAGAGCATGCGGTCCAAGTTCTCCTCTCCTTATGTTCTCAAAGAGTTGAATATTGTAAGTTGGTCATGAGTGAAGATGTTTTTTCTTCTATTTTTATTATTTCTAGGAACGGGAGTGAAGAGGGGAAGGCGAAAGCGTTAGAATTGGTCCGGCTTTTGAAAGACGTAGATTGCAGTTGTAGCCATAAAGAAGTGCATGAAAAGGAAGAGTTGGATTCATTGAGAGATTGTGGTAGCAATGAAGTAGTAGAGGAGAAGAGAGGGTCGACCAAGACGACCAGGCTTTTTGGAAGGATATCAAAGCCAAGTTTTCTTACTAGAAAGATGAGGTGA 2163 40.13 MGTSDVAEAASETIPSSCSFKVHGLMCTEVMKSVDQIMKILPTIEEARPRGQGMEALCSLSRTIDKTKLLLRDCRESSTLYMAVTGDKTIQRFQRETKHMEKSLRLIQNTVSTMLAVKISQIVDDLKGIKFMLGSSEEEARKALREWVKQNDTIPKAREDSEIRTLKIVGPMLHITSQEAISAEKLSLTKMREKVGDSDQTKMRLLNKLYELLSKHEHLIISSEEFSDNNAQSRPQAEFLTTPLAPEEFKCPLSSKLMFDPVLISSGETYERGWIKKWLDEGNNTCPKTQTRLTDLSMTPHIALKSSISKWCTENGVSIPDPNVQLDNSWEISSNSISSLGSSMNDISLHIGLGNIPLGYLNSGYNLDSVRTRTRNDPQNILYEELEFSSGFNELAQENQCKVIEDMTNRLKENGGVAHVLSENFMERLERFLRDALNLHNSRALRDGLELLRTLVSSTRNGTPTNGIGDMLGLLDTLLQSEPTSEVFTVLEALSTHPNYKLKLLRSDILPTVLKILDSQAKGSQESALKILCNLSSNNDSNNNEICSKMISLNCIPKLVPLFQDESLSGKCILILENLCNAEEGRVSITETEGCLESIARVVDSNCEEEQEHAVQVLLSLCSQRVEYCKLVMSEDVFSSIFIISRNGSEEGKAKALELVRLLKDVDCSCSHKEVHEKEELDSLRDCGSNEVVEEKRGSTKTTRLFGRISKPSFLTRKMR 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8171749 8177937 + Conep08aG0084000.1 Cone8ag0814 443363

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0814 720 ProSiteProfiles U-box domain profile. 244 318 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone8ag0814 720 SUPERFAMILY RING/U-box 245 321 - -
Cone8ag0814 720 CDD RING-Ubox_PUB 246 298 IPR045210 -
Cone8ag0814 720 SUPERFAMILY ARM repeat 448 663 IPR016024 -
Cone8ag0814 720 SMART Ubox_2 248 311 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone8ag0814 720 PANTHER U BOX DOMAIN-CONTAINING 26 665 - -
Cone8ag0814 720 Gene3D - 389 675 IPR011989 -
Cone8ag0814 720 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 319 IPR013083 -
Cone8ag0814 720 Pfam U-box domain 245 315 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0814 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0150 Cone-Chr8:776871 Cone8ag0814 Cone-Chr8:8171749 2.13E-27 dispersed
Cone8ag0814 Cone-Chr8:8171749 Cone10ag0439 Cone-Chr10:2040814 7.84E-15 dispersed
Cone12ag0765 Cone-Chr12:7041172 Cone8ag0814 Cone-Chr8:8171749 0 wgd
Cone17ag1349 Cone-Chr17:9445026 Cone8ag0814 Cone-Chr8:8171749 5.99E-123 wgd
Cone6ag1628 Cone-Chr6:12536070 Cone8ag0814 Cone-Chr8:8171749 6.96E-186 wgd
Cone8ag0814 Cone-Chr8:8171749 Cone9ag1553 Cone-Chr9:11266669 2.29E-174 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g984 Blo04g00915 Blo16g00047 . . . Bpe13g00442 . . . Cmo16g00674 . . . . . . . . . . . . . . . . . . . . . Cone8ag0814 Cone12ag0712 Cone6ag1628 Cone9ag1553 . . Chy07g01240 . . . Bda11g01864 . . . . Bma06g00119 . . . Cma16g00618 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003260 2 8 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 0 1 1 1 1 1 5 2 1 50