Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0823 ATGGATGTTAAGAAGGTGTTCCACATGACCGGTGGCAATGGGAGCACTAGCTATGCCAGAAATTCCTCACTTCAGAAGGAGGCATCAGATATGGCGAAACACATCACGATAGAAACAGTACGTGAAGTATATCTCTCCTTGACTCCAAAGAGCTTAAGTATAGCCGATTTGGGTTGCTCTTCCGGACCCAATACCTTATCAATCATCAAAGATATGATTGAAACGGTTCAGGGGACAAGCTCAGAAGTTCTCATTCAACCCCCACCAGAGTTTAGGGTTTATCTTAACGATCTTCCGACAAACGATTTCAATTCCATCTTCAAGGCTTTGCCTGAGTTCCATATCGAGCTAAGGAAGACAAACACTAGTACGACATGTCCCTCGGTTTTCATAGGAGCTTACCCTGGCTCCTTTTATGAAACCCTTTTCCCTAACAATTGCTTGCACTTTGTCCATTCATCTTATAGTCTTCACTGGCTCTCTAGGGTTCCTCCTGGTCTTTATAACAAGGAGGGCAAGCCGATTAACAAAGGGACTATATACATTTCTGAAACAAGCCCTGTAGAGGTGTCTCAAGCATACATGAAGCAGTTTCTTGAAGATTTTTCTCTTTTCCTTAGTTTACGGTCCAATGAGTTAATTGTGGGAGGGAGAATGGTGCTGATTTTGCTAGGAAGAAAAGGTTCTGACCATATTGACCGTGGCAACTCTTTCTTGTGGCAACTTCTCACGCAATCTTTTACCACGTTGGTTTCAATGGGTAAAATCGAGAAGGAGAGGCTGGATACTTATGATGTTCATTTCTATGCACCTTGCAAAGAAGAAATAGATAGTGAAGTGAGGAGAGAGGGTTCGTTTGGATTGGAGCGTATAGAGATGTTTGAGATAGAGAAAAACATGAACAAGGATGGTGAGAGCTACGGGACAACAGTTGCAAGGACTGTCAGGGCCATCCAAGAATCAATGATTGCCCACCATTTTGGAGAAGCCATCTTGGATGCTCTGTTTGAAAACTATGCAAGAATTCTAGATGATGAAATGGAGAAAGAAGAAATCAAGCCCATTTCTTTTGCTCTGGTCCTTAGAAAGTTAAGCAAATTGTAA 1104 42.3 MDVKKVFHMTGGNGSTSYARNSSLQKEASDMAKHITIETVREVYLSLTPKSLSIADLGCSSGPNTLSIIKDMIETVQGTSSEVLIQPPPEFRVYLNDLPTNDFNSIFKALPEFHIELRKTNTSTTCPSVFIGAYPGSFYETLFPNNCLHFVHSSYSLHWLSRVPPGLYNKEGKPINKGTIYISETSPVEVSQAYMKQFLEDFSLFLSLRSNELIVGGRMVLILLGRKGSDHIDRGNSFLWQLLTQSFTTLVSMGKIEKERLDTYDVHFYAPCKEEIDSEVRREGSFGLERIEMFEIEKNMNKDGESYGTTVARTVRAIQESMIAHHFGEAILDALFENYARILDDEMEKEEIKPISFALVLRKLSKL 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8211752 8213700 + Conep08aG0084900.1 Cone8ag0823 443372

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0823 367 Gene3D Vaccinia Virus protein VP39 21 351 IPR029063 -
Cone8ag0823 367 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1 363 IPR029063 -
Cone8ag0823 367 Gene3D - 6 350 IPR042086 -
Cone8ag0823 367 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 6 353 IPR005299 GO:0008168(InterPro)|GO:0008757(PANTHER)|GO:0032259(PANTHER)
Cone8ag0823 367 Pfam SAM dependent carboxyl methyltransferase 39 363 IPR005299 GO:0008168(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0823 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0823 Cone-Chr8:8211752 Cone9ag1569 Cone-Chr9:11318098 1.83E-162 dispersed
Cone8ag0823 Cone-Chr8:8211752 Cone8ag0824 Cone-Chr8:8223024 4.93E-92 tandem
Cone12ag0774 Cone-Chr12:7102654 Cone8ag0823 Cone-Chr8:8211752 9.56E-245 wgd
Cone6ag1644 Cone-Chr6:12587342 Cone8ag0823 Cone-Chr8:8211752 2.38E-89 wgd
Cone8ag0823 Cone-Chr8:8211752 Cone9ag1564 Cone-Chr9:11305494 1.46E-54 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1008 . . . . Bpe15g00419 . . . . Cmo16g00683 Cma03g00732 . . . . . . . . . . . . . . . . . . . . Cone8ag0823 . . . . . Chy07g01249 . . . . . . . . . . . . Cma16g00627 . . . . Cpe14g00535 . . . . . . . Cla07g00819 Cam07g0883 Cec07g0936 Cco07g0924 Clacu07g0858 Cmu07g0861 Cre07g1220 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006385 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 3 2 1 37