Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0825 ATGTTGTTCTCCGCCAAAGAGCTTCCCTCCCCATCATCCTTGTTCTCTGCCTATGCATCCATGGCTGCCTCAATGATGCTATTTAGATCAATGGCCAATGAACTTATCCCTCACCCACTTCGCTCTTACCTCCTCTCAACCCTACGTCATATCTTCAACTCCCACTCCTCCGAATTCACCCTTATCATTGAAGAAATTTGTGGCATGTCCAACAATTTAGTCTACGAGGCAGCACAAACCTACTTGTGCACCAAAATAGGCCCTAACACAAAAAGGGTCAGAATTAGCAAGTGCCCTAAAGACAATAACTTAACGATCCGGCTCGAACAAGGCGAGAAGTTGGTCGATTATTTCGACGGAGTGGTGCTCAAATGGAGTTATGTTTGCTTGGGACAAGGCAAAAGCAACCCGAATGAACCGTTTTCTCCCACGCCGGAAAAAAGATTCTTTGAGCTCAAGTTTCAGAAGAAAGACAGAGAAAAGGTGTTAGGGTTTTACATCCCTTACATACTTGATAGAGCCAAATTGATCAAAGACCAAGAAAGGGTCTTAAAAATGTACACGTTAAACAGCTCGCCGCCTCATAATTACAACGGTGTAAAGTGGCAAAGTGTGAATCTTGAGCACCCATCTACGTTTGAGACGTTGGCTATGGAGCAAGAGCTGAAAAACGCGATTATAGAGGATCTAAATAGGTTTGTGAAGAGGAAGGAGTTTTACAAGAGAGTAGGGAGAGCTTGGAAAAGAGGCTACTTGTTGTATGGCCCACCTGGGACTGGAAAATCAAGCTTGGTTGCTGCCATCGCAAATCACCTCAAGTTTGATGTTTATGACATGCAACTTGCTAATGTGATGCGTGATTCGGATCTTAGGAAACTGTTGTTATCTACGGCTAATAGATCCATTCTTGTGATTGAAGACATCGATTGCAGCGTGGAGTTGCCTAATCGCAGGCACGTAGATGGCCGTAAGCATCCAGCAGAAGTACAGGTGACCTTATCGGGACTGCTAAACTTCATAGATGGATTATGGTCAAGCTGTGGAGACGAGAGGATAATCATATTCACCACGAATCACAAAGATCGGTTAGACCCGGCCCTATTACGGCCCGGACGAATGGACATGCACATCCACATGTCCTACTGCACATATAACGGGTTCAAGCTTTTGGCTTCAAATTACTTGGGTATTCAAAACTATCACAACCTGTATGGAGATATTGAAAACTTGCTCAAGGAAACAGAAGTGACCCCAGCCCAAGTTGCAGAAGAGTTGATGAAGAGTGAAGAAGTGGATGTTGCTCTAGAAGGCCTTGTTAAGCTTCTTAAGAGAAAGAAATTGGAAGATGATGGTTGTGATAATAATGGTGAAGATCAAGTAGACAAAAGGAGCGGATTAAGGGGAAGGAAAAGGCAGAAGAAAGAGACTGTCAAGCCTATGAATACTAGGCAAAGGACGCGTACTATAAGAAAACGAATCTTGTAA 1485 43.77 MLFSAKELPSPSSLFSAYASMAASMMLFRSMANELIPHPLRSYLLSTLRHIFNSHSSEFTLIIEEICGMSNNLVYEAAQTYLCTKIGPNTKRVRISKCPKDNNLTIRLEQGEKLVDYFDGVVLKWSYVCLGQGKSNPNEPFSPTPEKRFFELKFQKKDREKVLGFYIPYILDRAKLIKDQERVLKMYTLNSSPPHNYNGVKWQSVNLEHPSTFETLAMEQELKNAIIEDLNRFVKRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAIANHLKFDVYDMQLANVMRDSDLRKLLLSTANRSILVIEDIDCSVELPNRRHVDGRKHPAEVQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDMHIHMSYCTYNGFKLLASNYLGIQNYHNLYGDIENLLKETEVTPAQVAEELMKSEEVDVALEGLVKLLKRKKLEDDGCDNNGEDQVDKRSGLRGRKRQKKETVKPMNTRQRTRTIRKRIL 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8236773 8240068 + Conep08aG0085100.1 Cone8ag0825 443374

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0825 494 Pfam Domain associated at C-terminal with AAA 36 129 IPR025753 -
Cone8ag0825 494 Gene3D - 378 450 - -
Cone8ag0825 494 PANTHER BCS1 AAA-TYPE ATPASE 19 446 IPR050747 -
Cone8ag0825 494 MobiDBLite consensus disorder prediction 450 494 - -
Cone8ag0825 494 ProSitePatterns AAA-protein family signature. 351 369 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone8ag0825 494 SMART AAA_5 247 383 IPR003593 GO:0016887(InterPro)
Cone8ag0825 494 CDD RecA-like_BCS1 226 379 - -
Cone8ag0825 494 MobiDBLite consensus disorder prediction 450 465 - -
Cone8ag0825 494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 428 IPR027417 -
Cone8ag0825 494 Pfam ATPase family associated with various cellular activities (AAA) 251 380 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone8ag0825 494 Gene3D - 199 377 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0825 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0705 Cone-Chr2:32659997 Cone8ag0825 Cone-Chr8:8236773 6.79E-105 dispersed
Cone8ag0825 Cone-Chr8:8236773 Cone16ag0369 Cone-Chr16:6084213 1.12E-12 dispersed
Cone17ag1362 Cone-Chr17:9515782 Cone8ag0825 Cone-Chr8:8236773 5.22E-15 wgd
Cone20ag0119 Cone-Chr20:527030 Cone8ag0825 Cone-Chr8:8236773 5.22E-15 wgd
Cone4ag1929 Cone-Chr4:13656399 Cone8ag0825 Cone-Chr8:8236773 3.29E-146 wgd
Cone6ag1646 Cone-Chr6:12594295 Cone8ag0825 Cone-Chr8:8236773 2.44E-149 wgd
Cone7ag1841 Cone-Chr7:11959774 Cone8ag0825 Cone-Chr8:8236773 5.46E-75 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1027 . . . Bda10g00144 . . . Bma15g00992 . . Cma03g00724 Cma07g00469 Car03g00663 . Sed14g1153 . Cpe10g00633 Bhi03g00924 Tan03g2018 Cmetu08g1706 . Hepe04g1547 . . Cla01g01938 Cam01g2025 Cec04g1683 Cco04g1747 Clacu01g2046 Cmu01g1922 Cre04g1599 Cone8ag0825 . Cone6ag1646 . Lsi01g00648 . Chy07g01254 Cme08g00882 . Blo06g00140 . . . . . . . Cmo03g00750 Cmo07g00466 . . . . . . . . . . . . . Cla07g00824 Cam07g0890 Cec07g0942 Cco07g0933 Clacu07g0864 Cmu07g0867 Cre07g1228 Lsi07g00245 Csa06g03274 Chy02g00617 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013760 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 24