Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0832 ATGGCCGAGTTCTTCTCATTAGGCAGTAGTAGTGCTACTGAAGAAGGCACAGAAAGAGAAAGAGAAAGAGAGAGAGAAAGAAACCAAGCAGATCGTCATCATCGTCCATTATTCTTGTACAAAAACCAACCATCCGAAGTGGCGTACAAGGGCCCCACACCACCACCACCTTCTTCCTCCGAGCTATGGCAACAGCAACAAGAACAACACCTCCAACTACTCCAAACCCAAGCCCTACTACGCGGCCATGGCCACGGCCACGATCTCTACCCATCAGCCGGGCTAGGCATCGGTCCAAGCAGCAGCAACCGGCCCGCGGGCGTGATAAACTTCGAGTGGGACATGGATCAGTATTCACCATCGTCCAGATCAGCAGCGGCGTTAATGATGATGACGCCAGCGAGGTCGGGATCATATTCATCCGGGACAGGAGGAGGTGGTGGGGTCAGCTGCCAAGATTGTGGGAATCAGGCGAAGAAGGATTGTGTGCATATGAGATGTCGGACTTGTTGTAAGAGCCGAGGGTTCGATTGTCAGACCCACGTTAAGAGCACTTGGGTTCCCGCGTCTAGGCGAAGAGAGCGCCAAGCTCAAGCTCAAGCCCAGCAAATAGTTGAGGTCGGAGCAGGAGGAGAGAATATTCCGAAGAGGCCGAGAGAGAATCAGAATATTCCAATTACTGGTGCTGCTGCTCGTGATCATTCTACTTCTCATGATCTAGTTACACCCACAAACAATGCGTCGTCAGGGTTGGAGTTAGTAGGGAGCTTTCCGGCAGAAGTGAGCTCGAACACAGTTTTCCGATGCGTAAGAATGAGCTCCATTGAGGAGAATGATGAGGACCAGTACGCTTATCAGACGGCAGTGAATATAGGAGGGCATGTGTTCAAGGGTATTCTCTACGATCAAGGCCCTAATTATAATGATCATCCGACGAATTATAATTACAATTCTCTTCCTGGTGGTGGTGGAGGCGGAGACTCCTCTTCTGGCGGAGGCAGCGGCGGTACTGCTGGTATCCAACCACTAAATCTCATCACCGGCACCCTTGCAAGTGGTAGTGGTGGTGGTGGTGTTGGTGGTTCCACTTCATACCTTGATTCTTCTTTATATCCTCCCACTCCGCTCAACAGTTTCATGGGTGCCGGTACGCAATTCTTCCTTCCACCAAGATCTAATTAG 1182 50.93 MAEFFSLGSSSATEEGTERERERERERNQADRHHRPLFLYKNQPSEVAYKGPTPPPPSSSELWQQQQEQHLQLLQTQALLRGHGHGHDLYPSAGLGIGPSSSNRPAGVINFEWDMDQYSPSSRSAAALMMMTPARSGSYSSGTGGGGGVSCQDCGNQAKKDCVHMRCRTCCKSRGFDCQTHVKSTWVPASRRRERQAQAQAQQIVEVGAGGENIPKRPRENQNIPITGAAARDHSTSHDLVTPTNNASSGLELVGSFPAEVSSNTVFRCVRMSSIEENDEDQYAYQTAVNIGGHVFKGILYDQGPNYNDHPTNYNYNSLPGGGGGGDSSSGGGSGGTAGIQPLNLITGTLASGSGGGGVGGSTSYLDSSLYPPTPLNSFMGAGTQFFLPPRSN 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8313349 8315013 - Conep08aG0085800.1 Cone8ag0832 443381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0832 393 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 386 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Cone8ag0832 393 NCBIfam LRP1 C-terminal domain 257 305 IPR006511 -
Cone8ag0832 393 NCBIfam putative zinc finger domain, LRP1 type 150 192 IPR006510 -
Cone8ag0832 393 MobiDBLite consensus disorder prediction 311 338 - -
Cone8ag0832 393 Pfam Domain of unknown function (DUF702) 148 306 - -
Cone8ag0832 393 MobiDBLite consensus disorder prediction 1 67 - -
Cone8ag0832 393 MobiDBLite consensus disorder prediction 14 39 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1176 Cone-Chr12:9305353 Cone8ag0832 Cone-Chr8:8313349 1.71E-11 wgd
Cone12ag0735 Cone-Chr12:6778231 Cone8ag0832 Cone-Chr8:8313349 5.98E-138 wgd
Cone17ag1376 Cone-Chr17:9557174 Cone8ag0832 Cone-Chr8:8313349 5.43E-52 wgd
Cone20ag0106 Cone-Chr20:478496 Cone8ag0832 Cone-Chr8:8313349 2.89E-51 wgd
Cone4ag1946 Cone-Chr4:13719543 Cone8ag0832 Cone-Chr8:8313349 7.04E-49 wgd
Cone6ag1659 Cone-Chr6:12647671 Cone8ag0832 Cone-Chr8:8313349 3.51E-61 wgd
Cone7ag1860 Cone-Chr7:12025045 Cone8ag0832 Cone-Chr8:8313349 7.45E-49 wgd
Cone8ag0832 Cone-Chr8:8313349 Cone8ag1222 Cone-Chr8:10333267 6.81E-35 wgd
Cone8ag0832 Cone-Chr8:8313349 Cone9ag1584 Cone-Chr9:11367151 1.30E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46684 PF00012 HSP70 9.20E-265 CL0108 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0832 K27807 - rcu:8277615 242.662