Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0834 ATGGGTGTTCTTAGTTCCTCTCCATCTCCTCTGGCAGTGAACTTAATAGTAACCTTCACATTGTTGTTGATTGGTAGTATTACTACTGTAGAATCAAAGACATACTGGAAAGATATTGAAGCCTTAAAGGAAGTGAAGAACCGGGTCGACCCCGGCTCGATCAGTCCCGGTTCGTGCCTCAGCTCTTGGGACTTCACCTCCGACCCATGCGACACCCTCTTCTCGGACCGGTTCACTTGCGGGTTCAGGTGCGACTTGACTGTTTCTGGTACGAGTCGAATTACCGAGCTCGGCCTCGACCAAGCTGGTTACAACGCCTCACTCTCTTCCATCTCTTGGAACCTACCTTACTTACAAATCCTAGACCTTTCCAACAATTTCTTCTCCGGTCCGATCCCTGATTCGCTCTCTAATCTGACTCAGCTCCGTCAACTCGGTCTGTCTGGAAACTCATTATCAGGTCCAGTGCCTGTTTCACTTGGTTGGCTCTCTAGCCTTGAAGAACTATACTTAGACAGAAACAACCTCGAAGGTAAAGTCCCATCTAGCTTCAAGTGGCTTAAAAGCTTAAACCGGCTCGAGCTACAATCAAACCGGTTCAATGGCGAGTTTCCCAAATTGAGTTTTCTCAAAAGGTTGTATTATTTAGACGTAAGCGACAATGCCATCTCCGGCGATATTCCGGCCGGTTCATTTCCGGATTCAGTCGTTCAAATCTCAATGAGAAACAACAGCTTATCAGGAAGAATTAATCCAGAAAGCTTCAGAAATTTGGGTTATTTACAAGTCATGGATTTAAGCCGTAACCAACTTAACGGTCAAGTTCCTTCTCTTCTTTTCGAACATCCATCTCTTCAACAAATCACTCTCTCCTTCAACAAATTCTCCTCTGTCCAATACCCAAGTGGTAGTTTTCTCACAAGTGGTCTTATTGCGGTGGATCTGAGCAATAACGAGATTGATGGGCTTTTACCGACGTTTATGGCTTCGTTGCCAAAACTATCCGCTTTGTCGCTTGCGAACAACAAGTTTCGAGGAATGATTCCGATTGAGTATGCGTTAAAGACGGTTATGCCCCGGCCGGGTTTGGGGAGCTCGCAATTTGTGAGGTTGTTGTTGGGGGGTAACTACTTATTTGGACCCGTACCCGACCCATTGATCCGGATCAAACCCGATTCGGCAACAGTGGGTCTGGCTGATAATTGTTTGTACAGCTGTCCGATGAATTTATTTTTTTGTGAGGGTGGGGCGCAGAAATCGCTGGAGCAGTGTCGGAATTTTGGTCCTGTAATTCCTTGA 1299 46.19 MGVLSSSPSPLAVNLIVTFTLLLIGSITTVESKTYWKDIEALKEVKNRVDPGSISPGSCLSSWDFTSDPCDTLFSDRFTCGFRCDLTVSGTSRITELGLDQAGYNASLSSISWNLPYLQILDLSNNFFSGPIPDSLSNLTQLRQLGLSGNSLSGPVPVSLGWLSSLEELYLDRNNLEGKVPSSFKWLKSLNRLELQSNRFNGEFPKLSFLKRLYYLDVSDNAISGDIPAGSFPDSVVQISMRNNSLSGRINPESFRNLGYLQVMDLSRNQLNGQVPSLLFEHPSLQQITLSFNKFSSVQYPSGSFLTSGLIAVDLSNNEIDGLLPTFMASLPKLSALSLANNKFRGMIPIEYALKTVMPRPGLGSSQFVRLLLGGNYLFGPVPDPLIRIKPDSATVGLADNCLYSCPMNLFFCEGGAQKSLEQCRNFGPVIP 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8352982 8355311 + Conep08aG0086000.1 Cone8ag0834 443383

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0834 432 Gene3D Ribonuclease Inhibitor 207 420 IPR032675 -
Cone8ag0834 432 SMART LRR_typ_2 163 186 IPR003591 -
Cone8ag0834 432 SMART LRR_typ_2 210 234 IPR003591 -
Cone8ag0834 432 SMART LRR_typ_2 115 139 IPR003591 -
Cone8ag0834 432 SMART LRR_typ_2 258 282 IPR003591 -
Cone8ag0834 432 Gene3D Ribonuclease Inhibitor 37 206 IPR032675 -
Cone8ag0834 432 Pfam Leucine Rich Repeat 165 185 IPR001611 GO:0005515(InterPro)
Cone8ag0834 432 FunFam Nuclear pore complex protein NUP107 35 206 - -
Cone8ag0834 432 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 14 426 IPR053213 -
Cone8ag0834 432 Pfam Leucine rich repeat 114 152 IPR001611 GO:0005515(InterPro)
Cone8ag0834 432 Pfam Leucine rich repeat 241 295 IPR001611 GO:0005515(InterPro)
Cone8ag0834 432 SUPERFAMILY L domain-like 63 354 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0834 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1377 Cone-Chr17:9565474 Cone8ag0834 Cone-Chr8:8352982 2.23E-73 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1040 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0834 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012152 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 1 1 30