Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0841 ATGGCCAAGTACCATAACTTTGTTTCAACTCTTCTCTTTGTCATTCTCTTCTCTTTAACGACTAGTTTTGCAAACCAAGAAAATCTCGATGGTTTGAGGATTAATGCTATTGATCGATGCTGGAGATCGGACCCAAAATGGAGAAAGAACCGCCAACAACTGGCTACATGCTCGGTTGGTTTTGCTGGTAAGATGACCAACAACATAGGAACCGGGCTCGTCCATTATACAGTAACCAATCCTACAGATGATCCACTGAATCCTAAGCCGGGATCCCTTAGGTACGGTGCAACCATGATAAAAAACAGAGTGTGGATCACGTTTTCTCAAGATATGCGCATCAGGCTTGAGAAACCGCTCCTTATTAGTAGCTTCACCGCGATCGACGGACGAGGCGTGGAGATTCATATTGCAGGTAATGCATGCTTGATGGTGTATAAGGCTAGCAATGTGATCATCCATGGGCTTAAGATCTACCATTGCAAGCGTCAAGGACCCGGTCCGGTGATGGGCCCAGGTCAACAGATGTTAGAACTAGGTCAAGTAGATGGGGATGCAATCAGATTAGTTTCCGCATCGAAGATCTGGATAGACCACAACACATTGTATAAATGCTCAGATGGACTCTTGGATGTGACGCGTGGGTCGACTGGCATCACCATCTCGAACAATTGGTTCAGGGAACAGGACAAGGTCATGCTGCTCGGACACGATGATGGATACTTGTGGGACAAGACCATGAAGGTGACTGTTGCATATAACCATTTTGGACCCAATTGCAATCAAAGAATGCCAAGGATACGGCACGGATATGCACACGTTGTAAACAACCTCTATCAAGGATGGACACAATATGCAATTGGTGGTAGTATGAATCCTAGCGTTGAGAGTCAAGCCAATCTCTTTATCGCGTCCAAAAATGGAAGGAAGGAGGTGACATGGAACCCAGCAAGTAGCCGGACTAGTTCCGGCAAGTTTTACTCTGTGAGGGATGTTTTTGAAAACGGAGCTTCTTTTAATCAAATGTCTCAAGGCGGGGGTGGCGCAAAACCGAACTACCAGCCCCACGAATGGTTTGAAGTTGCAGATGCGAGTGGTGTTAGAGCCTTGACGAGTTCATCGGGTGCTTTAACTTGCACAAAACGTTATAGATGTTGA 1158 46.03 MAKYHNFVSTLLFVILFSLTTSFANQENLDGLRINAIDRCWRSDPKWRKNRQQLATCSVGFAGKMTNNIGTGLVHYTVTNPTDDPLNPKPGSLRYGATMIKNRVWITFSQDMRIRLEKPLLISSFTAIDGRGVEIHIAGNACLMVYKASNVIIHGLKIYHCKRQGPGPVMGPGQQMLELGQVDGDAIRLVSASKIWIDHNTLYKCSDGLLDVTRGSTGITISNNWFREQDKVMLLGHDDGYLWDKTMKVTVAYNHFGPNCNQRMPRIRHGYAHVVNNLYQGWTQYAIGGSMNPSVESQANLFIASKNGRKEVTWNPASSRTSSGKFYSVRDVFENGASFNQMSQGGGGAKPNYQPHEWFEVADASGVRALTSSSGALTCTKRYRC 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8427211 8428548 + Conep08aG0086700.1 Cone8ag0841 443390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0841 385 PANTHER PECTATE LYASE 18-RELATED 16 381 IPR045032 GO:0030570(InterPro)
Cone8ag0841 385 Pfam Pectate lyase 140 302 IPR002022 -
Cone8ag0841 385 SUPERFAMILY Pectin lyase-like 35 376 IPR011050 -
Cone8ag0841 385 Gene3D - 34 378 IPR012334 -
Cone8ag0841 385 SMART amb_all 111 308 IPR002022 -
Cone8ag0841 385 PRINTS Pollen allergen Amb family signature 263 282 IPR018082 -
Cone8ag0841 385 PRINTS Pollen allergen Amb family signature 183 204 IPR018082 -
Cone8ag0841 385 PRINTS Pollen allergen Amb family signature 285 304 IPR018082 -
Cone8ag0841 385 PRINTS Pollen allergen Amb family signature 356 379 IPR018082 -
Cone8ag0841 385 PRINTS Pollen allergen Amb family signature 324 348 IPR018082 -
Cone8ag0841 385 PRINTS Pollen allergen Amb family signature 57 74 IPR018082 -
Cone8ag0841 385 PRINTS Pollen allergen Amb family signature 119 135 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1100 Cone-Chr11:8571623 Cone8ag0841 Cone-Chr8:8427211 4.51E-33 dispersed
Cone8ag0710 Cone-Chr8:7123264 Cone8ag0841 Cone-Chr8:8427211 3.66E-90 dispersed
Cone8ag0819 Cone-Chr8:8193754 Cone8ag0841 Cone-Chr8:8427211 1.28E-83 dispersed
Cone8ag0841 Cone-Chr8:8427211 Cone9ag1106 Cone-Chr9:7088960 3.10E-100 dispersed
Cone12ag0724 Cone-Chr12:6660506 Cone8ag0841 Cone-Chr8:8427211 5.96E-262 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0841 K01728 - csv:101217103 547.354