Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0851 ATGGAACAGTGGAGGGCTCGTGGTTTCTCACAATCAAATACGGCGCCTAATTCGTCATCATCTCCTTCCGCTTGTCTTCTCCCTCAACCTCTAGTCCCCTCCAATCGGACCGATTCCAGACAAAGATCTGATATGGAAGTAGCAAAAGATCCTACTGTGGTTAGGAAAGTTCAAAAGGCCGATCGAGAAAAGTTAAGGAGAGATCGACTCAATGAGCATTTCCTTGAGTTAGGAAACACCCTAGATGCAGATCCGGATAGGCCCAAAAATGACAAGGCAACCATCCTTACAGACACAATCCAAATGCTTAAGGATTTAACTGCGGAAGTTGATCGGCTTAAAGCTGAATATGCAACTCTTACGGAAGAATCACGTGAGCTCACCCAGGAGAAGAATGAACTTAAAGAAGAGAAGGCTTCGTTGAAATCTGATATTGATAATCTCGATGTTCAATATCAACAAAGAATGAGGGTTATGTATCCATGGACTGCCATAGATCCTTCTCTTGTCATGGGCCCACCTTATACTACGTACCCAGTTTCGATTCCCATGCACCCATCAATGCAGCCATATCCCTTCTTCGGAAACCAAAATCCCAGTCCCATTCCCAATCCCCGTTCGACTTTTGTTCCATATACTAATGTGGGCCCGGCTAATCATCCAATCGAACAACCCTCATCCCAACATGCATCAGCTTCAAAACTTTCTGAGAAACACGATCCTAAAAGCAAGCCGTTGGATCATAATGAGGAAAGATGTGACGAGTCTGTTTATGTGGCAACTGACCTTGAACTTAAGATGCCTGGGTCATCAGCACTACAGGAGCTGTCTTGTGGGGGTAAGGGCAAGGAGTCATTAGAGAGTAGAAAAAGAAGTGTTATGGCAAGTTCTTCAAGCCGGTACTCTTCATCTTCTCAAATTGTGCAAGAGTGCTCGTCATCTAACAGTGTAGGTGATATTCCAAAGGCTACTAACTGA 978 44.48 MEQWRARGFSQSNTAPNSSSSPSACLLPQPLVPSNRTDSRQRSDMEVAKDPTVVRKVQKADREKLRRDRLNEHFLELGNTLDADPDRPKNDKATILTDTIQMLKDLTAEVDRLKAEYATLTEESRELTQEKNELKEEKASLKSDIDNLDVQYQQRMRVMYPWTAIDPSLVMGPPYTTYPVSIPMHPSMQPYPFFGNQNPSPIPNPRSTFVPYTNVGPANHPIEQPSSQHASASKLSEKHDPKSKPLDHNEERCDESVYVATDLELKMPGSSALQELSCGGKGKESLESRKRSVMASSSSRYSSSSQIVQECSSSNSVGDIPKATN 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8463240 8466431 - Conep08aG0087700.1 Cone8ag0851 443400

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0851 325 MobiDBLite consensus disorder prediction 1 53 - -
Cone8ag0851 325 MobiDBLite consensus disorder prediction 269 325 - -
Cone8ag0851 325 CDD bHLH_AtILR3_like 59 135 - -
Cone8ag0851 325 MobiDBLite consensus disorder prediction 39 53 - -
Cone8ag0851 325 MobiDBLite consensus disorder prediction 1 38 - -
Cone8ag0851 325 Coils Coil 96 151 - -
Cone8ag0851 325 MobiDBLite consensus disorder prediction 195 232 - -
Cone8ag0851 325 SMART finulus 60 112 IPR011598 GO:0046983(InterPro)
Cone8ag0851 325 Gene3D - 54 157 IPR036638 GO:0046983(InterPro)
Cone8ag0851 325 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 54 106 IPR011598 GO:0046983(InterPro)
Cone8ag0851 325 PANTHER TRANSCRIPTION FACTOR BHLH121 26 323 IPR044579 GO:0003700(InterPro)|GO:0006879(InterPro)
Cone8ag0851 325 MobiDBLite consensus disorder prediction 195 253 - -
Cone8ag0851 325 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 55 133 IPR036638 GO:0046983(InterPro)
Cone8ag0851 325 MobiDBLite consensus disorder prediction 291 325 - -
Cone8ag0851 325 Pfam Helix-loop-helix DNA-binding domain 55 107 IPR011598 GO:0046983(InterPro)
Cone8ag0851 325 MobiDBLite consensus disorder prediction 233 253 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0851 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0851 Cone-Chr8:8463240 Cone8ag1455 Cone-Chr8:11228658 4.48E-07 dispersed
Cone12ag1212 Cone-Chr12:9455206 Cone8ag0851 Cone-Chr8:8463240 2.48E-42 wgd
Cone12ag0715 Cone-Chr12:6609367 Cone8ag0851 Cone-Chr8:8463240 1.89E-130 wgd
Cone8ag0851 Cone-Chr8:8463240 Cone8ag1264 Cone-Chr8:10483506 7.08E-57 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1114 Blo04g00884 . . . . . . . . . Cma03g00685 Cma07g00427 Car03g00631 Car07g00374 Sed14g1197 Cpe19g00860 Cpe10g00664 Bhi03g00866 Tan03g2084 Cmetu04g0958 . Hepe04g1592 . . Cla01g01980 Cam01g2074 Cec04g1733 Cco04g1798 Clacu01g2095 Cmu01g1971 Cre04g1646 Cone8ag0851 Cone12ag0715 . . Lsi01g00601 . . Cme08g00928 . . . . . . Bma03g00960 . Sed01g0221 Cmo03g00709 Cmo07g00424 . . . . . . Bhi10g01891 Tan05g1191 Cmetu11g1417 . Hepe08g0945 . . . . . . . . . . Csa06g03326 Chy02g00573 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001472 1 2 3 3 2 2 2 2 2 2 2 2 3 1 2 3 2 4 3 2 2 2 2 2 2 2 2 6 5 2 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46688 PF00335 Tetraspanin 2.90E-15 CL0347 Cone TF