Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0853 ATGGCGGACGAGAGGGTTACAGGAGTGGTCCAATGGTTCAACGATTCCAAAGGCTTCGGTTTCATCAAACCTGACGTAGAAGGTCCCGATCTGTTCGTTCACCAATCCTCGATCAATTCTGACGGTTATCGTTGCCTTGTCGAGGGAGAGGCCGTCGAATTCGAGATCGCAGCTGGCGATGACGGCAAATCCAAAGCCGTGGAAGTCATTAGCCTCGACGGACAGGGGAGCAAACGAGACAGCTACGGTGGTGGAAGAGGAGGAGGCCGTAACACTGGTGGTGGCTTCGGTGACTGGAGAGGCGGCGATCGGAGCAACGGAGGTGGCGGATCCGGTGGTTCTGGGTGCTACAACTGCGGGAATGTTGGACACTTGGCTAGGGATTGCAATCGTTCGAGTAACCGTCGTGGTGGAGGCGGCGGAGATTGTTTTTCTTGTGGTGAGGCCGGACACATGGCGAGGGACTGTCCTCGTGGAACCAGCGGCGGAGGTGGTAGTGGTGGTAGTGGAGGCTGTTATAAATGTGGAGAGTTTGGTCACTTGGCTAGAGACTGCAGTCATGGTAACGGTGGTGGAGGCGGTGGCAGAGGGAGTTGCTATAGCTGTGGAGAATTCGGCCACATAGCTAGGGATTGCGCACGAGGTAACAGTGGCGGTTACGGTGCTGGGAGATTTGGTGGTGGCAGCTCTGGAGCTGGAGGATCTGGAGGTGGCACCTGCTTCAATTGTGGAGTGCCAGGGCATTTCGCAAGAGAGTGCCCAAATGCAGCTTGA 774 56.33 MADERVTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSINSDGYRCLVEGEAVEFEIAAGDDGKSKAVEVISLDGQGSKRDSYGGGRGGGRNTGGGFGDWRGGDRSNGGGGSGGSGCYNCGNVGHLARDCNRSSNRRGGGGGDCFSCGEAGHMARDCPRGTSGGGGSGGSGGCYKCGEFGHLARDCSHGNGGGGGGRGSCYSCGEFGHIARDCARGNSGGYGAGRFGGGSSGAGGSGGGTCFNCGVPGHFARECPNAA 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8472957 8474322 + Conep08aG0087900.1 Cone8ag0853 443402

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0853 257 Pfam 'Cold-shock' DNA-binding domain 7 70 IPR002059 GO:0003676(InterPro)
Cone8ag0853 257 Gene3D - 232 257 - -
Cone8ag0853 257 ProSiteProfiles Zinc finger CCHC-type profile. 172 185 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone8ag0853 257 PANTHER COLD SHOCK DOMAIN PROTEIN 2 188 255 - -
Cone8ag0853 257 CDD CSP_CDS 6 69 IPR002059 GO:0003676(InterPro)
Cone8ag0853 257 SUPERFAMILY Retrovirus zinc finger-like domains 172 213 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone8ag0853 257 MobiDBLite consensus disorder prediction 75 104 - -
Cone8ag0853 257 SMART c2hcfinal6 198 214 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone8ag0853 257 SMART c2hcfinal6 142 158 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone8ag0853 257 SMART c2hcfinal6 115 131 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone8ag0853 257 SMART c2hcfinal6 171 187 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone8ag0853 257 SMART c2hcfinal6 239 255 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone8ag0853 257 ProSiteProfiles Zinc finger CCHC-type profile. 240 255 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone8ag0853 257 SUPERFAMILY Retrovirus zinc finger-like domains 223 255 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone8ag0853 257 Gene3D - 194 221 - -
Cone8ag0853 257 Gene3D - 139 164 - -
Cone8ag0853 257 Gene3D - 111 138 - -
Cone8ag0853 257 Gene3D - 165 193 - -
Cone8ag0853 257 ProSiteProfiles Zinc finger CCHC-type profile. 199 212 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone8ag0853 257 ProSiteProfiles Zinc finger CCHC-type profile. 143 158 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone8ag0853 257 SMART csp_8 7 72 IPR011129 GO:0003676(InterPro)
Cone8ag0853 257 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Cone8ag0853 257 PRINTS Eggshell protein signature 159 174 - -
Cone8ag0853 257 PRINTS Eggshell protein signature 187 197 - -
Cone8ag0853 257 PRINTS Eggshell protein signature 226 244 - -
Cone8ag0853 257 PRINTS Eggshell protein signature 84 95 - -
Cone8ag0853 257 ProSiteProfiles Zinc finger CCHC-type profile. 116 129 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone8ag0853 257 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676(InterPro)
Cone8ag0853 257 SUPERFAMILY Retrovirus zinc finger-like domains 106 159 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone8ag0853 257 SUPERFAMILY Nucleic acid-binding proteins 4 71 IPR012340 -
Cone8ag0853 257 Gene3D - 1 69 IPR012340 -
Cone8ag0853 257 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676(InterPro)
Cone8ag0853 257 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676(InterPro)
Cone8ag0853 257 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676(InterPro)
Cone8ag0853 257 Pfam Zinc knuckle 171 187 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone8ag0853 257 Pfam Zinc knuckle 198 212 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone8ag0853 257 Pfam Zinc knuckle 238 255 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone8ag0853 257 Pfam Zinc knuckle 115 129 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone8ag0853 257 Pfam Zinc knuckle 143 157 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0853 K09250 - - csv:101216334 272.707
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0458 Cone-Chr20:2370666 Cone8ag0853 Cone-Chr8:8472957 4.36E-27 dispersed
Cone12ag1224 Cone-Chr12:9510955 Cone8ag0853 Cone-Chr8:8472957 4.61E-24 wgd
Cone12ag0714 Cone-Chr12:6597626 Cone8ag0853 Cone-Chr8:8472957 1.57E-74 wgd
Cone6ag1686 Cone-Chr6:12782102 Cone8ag0853 Cone-Chr8:8472957 8.84E-48 wgd
Cone8ag0853 Cone-Chr8:8472957 Cone8ag1275 Cone-Chr8:10525508 7.43E-23 wgd
Cone8ag0853 Cone-Chr8:8472957 Cone9ag1607 Cone-Chr9:11498760 4.36E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1119 Blo04g00883 . . . Bpe15g00473 Bpe13g00413 . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0853 Cone12ag0714 Cone6ag1686 . . . . . . . Bda11g01834 . . . Bma03g00959 Bma06g00094 . . . Cma16g01239 . . . . . . . . . . . . . . . . . . . Lsi07g01102 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006925 2 0 0 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 1 0 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46689 PF04133 Vps55 3.90E-32 No_clan Cone TF