Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0854 ATGGCTTCTATTCAAAGATATTCTTTCATTTTATCATTCTCTCTCTTTATCCAAATCTATCTCCTTCCATTCGGAGTATATTCATCATCAACATTCACAATCCTAAACAAGTGTAGCTACACGGTATGGCCCGGAATACTATCGAGTGCCGGTACACCTCAGCTCTCCACCACTGGTTTCGCTCTCCAACCGGGTGGGTCCACAACTCTAGACATCCCCACTTCGTGGTCCGGTCGCATCTGGGGTCGGACATATTGCACCCAAGACCCCACAACCGGTAAATTCTGGTGCGCCACTGCAGATTGTGCCTCAGGCCTGGTAGATTGCAATGGAGCCGGTGCAGTCCCACCTGCAACCTTGGCAGAGTTCACTCTAAACGGGGCCAACGGGCTTGATTTCTACGACGTCAGCCTAGTCGACGGCTACAACCTACCTATGTTGGTTGCACCACAAGGCGGGTTAGGTGGTGGAAACTGTACGAGCACCGGGTGCATGACGGACTTGAATGGTGCTTGTCCGTCTGAGCTGAGAGTGACGGGATTGGATGGCGGTGAGGGTGTTGCCTGTAAAAGTGCTTGTGGGGCGTTTGGGGAACCGCAATATTGTTGTAGTGGGGCTTATGGGAGTCCGGATACATGTAAGCCAAGCCAGTATTCCGAGTTCTTTAAAAGTGCTTGTCCACGAGCTTATAGTTATGCTTACGATGATGGAACAAGCACTTTCACTTGTGCATCTGCTAACTATGCTATCACTTTCTGTCCTTCCCCTGCCACCAGGTGA 780 50.51 MASIQRYSFILSFSLFIQIYLLPFGVYSSSTFTILNKCSYTVWPGILSSAGTPQLSTTGFALQPGGSTTLDIPTSWSGRIWGRTYCTQDPTTGKFWCATADCASGLVDCNGAGAVPPATLAEFTLNGANGLDFYDVSLVDGYNLPMLVAPQGGLGGGNCTSTGCMTDLNGACPSELRVTGLDGGEGVACKSACGAFGEPQYCCSGAYGSPDTCKPSQYSEFFKSACPRAYSYAYDDGTSTFTCASANYAITFCPSPATR 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8476467 8477246 + Conep08aG0088000.1 Cone8ag0854 443403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0854 259 Pfam Thaumatin family 36 254 IPR001938 -
Cone8ag0854 259 Gene3D Thaumatin 30 254 IPR037176 -
Cone8ag0854 259 PIRSF PR5 1 259 IPR001938 -
Cone8ag0854 259 PANTHER OS03G0233200 PROTEIN 20 254 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Cone8ag0854 259 ProSitePatterns Thaumatin family signature. 93 109 IPR017949 -
Cone8ag0854 259 CDD TLP-PA 31 253 - -
Cone8ag0854 259 ProSiteProfiles Thaumatin family profile. 29 254 IPR001938 -
Cone8ag0854 259 FunFam THAUMATIN-LIKE PROTEIN 1 30 254 - -
Cone8ag0854 259 SUPERFAMILY Osmotin, thaumatin-like protein 31 255 IPR037176 -
Cone8ag0854 259 PRINTS Pathogenesis-related protein signature 79 90 IPR001938 -
Cone8ag0854 259 PRINTS Pathogenesis-related protein signature 132 148 IPR001938 -
Cone8ag0854 259 PRINTS Pathogenesis-related protein signature 31 43 IPR001938 -
Cone8ag0854 259 PRINTS Pathogenesis-related protein signature 244 253 IPR001938 -
Cone8ag0854 259 SMART tha2 32 254 IPR001938 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0237 Cone-Chr3:1266987 Cone8ag0854 Cone-Chr8:8476467 4.37E-93 dispersed
Cone3ag0437 Cone-Chr3:2135635 Cone8ag0854 Cone-Chr8:8476467 2.98E-77 dispersed
Cone8ag0854 Cone-Chr8:8476467 Cone9ag1609 Cone-Chr9:11505533 2.92E-95 dispersed
Cone14ag0985 Cone-Chr14:8127054 Cone8ag0854 Cone-Chr8:8476467 4.68E-99 transposed
Cone5ag0753 Cone-Chr5:3233926 Cone8ag0854 Cone-Chr8:8476467 2.65E-36 transposed
Cone17ag1410 Cone-Chr17:9689129 Cone8ag0854 Cone-Chr8:8476467 1.99E-125 wgd
Cone20ag0072 Cone-Chr20:349185 Cone8ag0854 Cone-Chr8:8476467 1.23E-119 wgd
Cone4ag1978 Cone-Chr4:13879218 Cone8ag0854 Cone-Chr8:8476467 2.14E-127 wgd
Cone6ag1687 Cone-Chr6:12785740 Cone8ag0854 Cone-Chr8:8476467 2.75E-24 wgd
Cone7ag1896 Cone-Chr7:12165863 Cone8ag0854 Cone-Chr8:8476467 4.44E-66 wgd
Cone8ag0854 Cone-Chr8:8476467 Cone9ag1608 Cone-Chr9:11503598 3.03E-126 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0854 - - - 0.0